| Protein: | rfc1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 934 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rfc1.
| Description | E-value | Query Range |
Subject Range |
|
|
358.0 | [0..1] | [908..160] |
|
|
356.0 | [0..330] | [837..116] |
|
|
355.0 | [0..327] | [813..114] |
|
|
354.0 | [0..329] | [802..112] |
|
|
353.0 | [0..321] | [811..108] |
|
|
351.0 | [0..326] | [803..120] |
|
|
351.0 | [0..326] | [803..120] |
|
|
351.0 | [0..326] | [802..120] |
|
|
351.0 | [0..326] | [803..120] |
|
|
350.0 | [0..326] | [803..120] |
|
Region A: Residues: [1-606] |
1 11 21 31 41 51
| | | | | |
1 MSNSDIRSFF GGGNAQKKPK VSPTPTSPKP KRSLKKKRIV LSDDEDGTIE NSKVPASKSK 60
61 VQKRNESEDI SHSLPSIVHE DDKLVGSDGV STTPDEYFEQ QSTRSRSKPR IISNKETTTS 120
121 KDVVHPVKTE NFANDLDTTS DSKPVVHQTR ATRKPAQPKA EKSTTSKSKS HTTTATTHTS 180
181 RSSKSKGLPR FSDEVSQALK NVPLIDVDSM GVMAPGTFYE RAATTQTPGS KPVPEGNSDC 240
241 LSGISFVITG ILETLTRQEA TDLIKQYGGK VTGAPSVRTD FILLGENAGP RKVETIKQHK 300
301 IPAINEDGLF YLITHLPASG GTGAAAQAAQ QKKEQEEKKI LETVARMDDS NKKESQPSQI 360
361 WTSKYAPTSL KDICGNKGVV QKLQKWLQDY HKNRKSNFNK PGPDGLGLYK AVLLSGPPGI 420
421 GKTTAAHLVA KLEGYDVLEL NASDTRSKRL LDEQLFGVTD SQSLAGYFGT KANPVDMAKS 480
481 RLVLIMDEID GMSSGDRGGV GQLNMIIKKS MIPIICICND RAHPKLRPLD RTTFDLRFRR 540
541 PDANSMRSRI MSIAYREGLK LSPQAVDQLV QGTQSDMRQI INLLSTYKLS CSEMTPQNSQ 600
601 AVIKNS
|
| Detection Method: |  |
| Confidence: | 20.0 |
| Match: | 1ksfX |
| Description: | N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA clamp loader activity | 6.51495346697904 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 6.40748863504898 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| mismatched DNA binding | 2.51625633651862 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| binding | 2.05253348982328 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| 1.85506769032946 | bayes_pls_golite062009 | |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| guanine/thymine mispair binding | 1.69026972999845 | bayes_pls_golite062009 |
| DNA insertion or deletion binding | 1.68890613599528 | bayes_pls_golite062009 |
| nucleic acid binding | 1.49633029954726 | bayes_pls_golite062009 |
| microtubule motor activity | 1.30090199952739 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| motor activity | 1.03253378953548 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| DNA binding | 0.967303417236485 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| transcription regulator activity | 0.748437190903548 | bayes_pls_golite062009 |
| single base insertion or deletion binding | 0.629563765934841 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
| double-strand/single-strand DNA junction binding | 0.0136229525922795 | bayes_pls_golite062009 |
|
Region A: Residues: [607-700] |
1 11 21 31 41 51
| | | | | |
1 EKHIVMKPWD ICSRYLHGGM FHPSSKSTIN DKLELYFNDH EFSYLMVQEN YLNTTPDRIR 60
61 QEPPKMSHLK HLELISSAAN SFSDSDLVDS MIHG
|
| Detection Method: | |
| Confidence: | 41.69897 |
| Match: | 1iqpA |
| Description: | Replication factor C |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [701-850] |
1 11 21 31 41 51
| | | | | |
1 PQQHWSLMPT HALMSCVRPA SFVAGSGSRQ IRFTNWLGNN SKTNKLYRML REIQVHMRLK 60
61 VSANKLDLRQ HYIPILYESL PVKLSTGHSD VVPEIIELMD EYYLNREDFD SITELVLPAD 120
121 AGEKLMKTIP TAAKSAFTRK YNSSSHPIAF
|
| Detection Method: | |
| Confidence: | 60.0 |
| Match: | 1sxjA |
| Description: | Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [851-934] |
1 11 21 31 41 51
| | | | | |
1 FGSSDVLPMK GSAQREVPDV EDAIEAEDEM LEEASDSEAA NEEDIDLSKD KFISVPKKPK 60
61 KRTKAKAEAS SSSSTSRRSR KKTA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
