| Protein: | rad13 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1112 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rad13.
| Description | E-value | Query Range |
Subject Range |
|
|
504.0 | [0..1] | [1112..1] |
|
|
386.0 | [0..50] | [793..2138] |
|
|
348.0 | [0..1] | [1096..1] |
|
|
336.0 | [0..48] | [795..1080] |
|
|
324.0 | [0..1] | [1012..1] |
|
|
314.0 | [0..1] | [1111..1] |
|
|
294.0 | [0..31] | [1079..599] |
|
Region A: Residues: [1-497] |
1 11 21 31 41 51
| | | | | |
1 MGVSGLWDIL EPVKRPVKLE TLVNKRLAID ASIWIYQFLK AVRDKEGNQL KSSHVVGFFR 60
61 RICKLLFFGI KPVFVFDGGA PSLKRQTIQK RQARRLDREE NATVTANKLL ALQMRHQAML 120
121 LEENNKKATA LANASVQNER QMPSSMTLDN SEIKPVLNQR KNYLKPDPYQ LPEMDVSFDK 180
181 LGSSYDPRIM SQDELTQYVS SFTKIEDINL FDFSNIDFDS ELFQSLPDTD KYSILSAARL 240
241 RSRLRMGLSS EQLSEMFPNR MDFSRFQIER LKERNDLTQR LMDFTGMNEF GPSRVVSEKN 300
301 REYILVKNEG AEGGWALGVI SGSTNNEPII IDDEATKLSS NLIDEDEDEA FYDVPLPSRS 360
361 HSMNPRELVA AKLKEIKENS FSENQQSDEA DYNVTDDLIL QLATQQSLEE NKKSKELFSL 420
421 SASEFDKLNS EKKTFEILST DIPAEDSMNS LLNDEENLKL EHVGDVSNDS LAFAEKKHPE 480
481 NGTSIFMDAL PSASREK
|
| Detection Method: |  |
| Confidence: | 35.522879 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-688] |
1 11 21 31 41 51
| | | | | |
1 KTNDLIDPLP FQPMDWGKSI FFEKLKKPTE TFMDSKTDIP SEAPDNSKLV EDTNLHTINA 60
61 TVNIESDLDA AKPGIENPII SPLLPVKDDE KDLDLRELNP LEPFENMKEQ ADDGTVTNPL 120
121 NVSSDKAMSV YLLSSENAKD TGDIKSESID AVLPTLETSS PSLSIPTDFQ KEASPNKGAA 180
181 ALSSKVEPEV V
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 2dfsA |
| Description: | No description for 2dfsA was found. |
|
Region A: Residues: [689-1007] |
1 11 21 31 41 51
| | | | | |
1 EKLLDEEEEE MIIRMAEEEK EYDRFVSELN QRHETEEWNQ EAFEKRLKEL KNQKRSEKRD 60
61 ADEVTQVMIK ECQELLRLFG LPYIVAPQEA EAQCSKLLEL KLVDGIVTDD SDVFLFGGTR 120
121 VYRNMFNQNK FVELYLMDDM KREFNVNQMD LIKLAHLLGS DYTMGLSRVG PVLALEILHE 180
181 FPGDTGLFEF KKWFQRLSTG HASKNDVNTP VKKRINKLVG KIILPSEFPN PLVDEAYLHP 240
241 AVDDSKQSFQ WGIPDLDELR QFLMATVGWS KQRTNEVLLP VIQDMHKKQF VGTQSNLTQF 300
301 FEGGNTNVYA PRVAYHFKS
|
| Detection Method: | |
| Confidence: | 51.30103 |
| Match: | 1ul1X |
| Description: | Crystal structure of the human FEN1-PCNA complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| flap endonuclease activity | 4.10438637013244 | bayes_pls_golite062009 |
| exonuclease activity | 3.55065728618765 | bayes_pls_golite062009 |
| single-stranded DNA specific endodeoxyribonuclease activity | 3.45300745776281 | bayes_pls_golite062009 |
| endonuclease activity | 3.40075034200919 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 3.29138075959109 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 3.25110450559975 | bayes_pls_golite062009 |
| 5'-3' exonuclease activity | 3.19536858640519 | bayes_pls_golite062009 |
| nuclease activity | 2.50181033811809 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.45364009363271 | bayes_pls_golite062009 |
| hydrolase activity | 2.4418166499042 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 2.3324415860722 | bayes_pls_golite062009 |
| 5'-3' exodeoxyribonuclease activity | 2.26658239783943 | bayes_pls_golite062009 |
| double-stranded DNA specific exodeoxyribonuclease activity | 2.09057967200253 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 2.0005433655378 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 1.9833086883205 | bayes_pls_golite062009 |
| 5'-flap endonuclease activity | 1.81850767854435 | bayes_pls_golite062009 |
| DNA binding | 1.67328600485167 | bayes_pls_golite062009 |
| nucleic acid binding | 1.61574912542722 | bayes_pls_golite062009 |
| single-stranded DNA specific exodeoxyribonuclease activity | 1.61167902830399 | bayes_pls_golite062009 |
| binding | 1.47549397931841 | bayes_pls_golite062009 |
| damaged DNA binding | 1.42836853175021 | bayes_pls_golite062009 |
| catalytic activity | 1.37534898662234 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.16717206930423 | bayes_pls_golite062009 |
| single-stranded DNA specific 5'-3' exodeoxyribonuclease activity | 1.15948049342759 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.901965019685213 | bayes_pls_golite062009 |
| protein binding | 0.236485289446406 | bayes_pls_golite062009 |
| ribonuclease activity | 0.198926730726347 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.176453677293411 | bayes_pls_golite062009 |
| single-stranded DNA specific 3'-5' exodeoxyribonuclease activity | 0.14861832363159 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.0978227645302046 | bayes_pls_golite062009 |
| 3'-5'-exodeoxyribonuclease activity | 0.0205129272358 | bayes_pls_golite062009 |
|
Region A: Residues: [1008-1112] |
1 11 21 31 41 51
| | | | | |
1 KRLENALSSF KNQISNQSPM SEEIQADADA FGESKGSDEL QSRILRRKKM MASKNSSDSD 60
61 SDSEDNFLAS LTPKTNSSSI SIENLPRKTK LSTSLLKKPS KRRRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
