| Protein: | pmh1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 318 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmh1.
| Description | E-value | Query Range |
Subject Range |
|
|
160.0 | [0..9] | [314..11] |
|
|
157.0 | [0..8] | [311..18] |
|
|
152.0 | [0..1] | [277..127] |
|
|
152.0 | [0..1] | [277..113] |
|
|
152.0 | [0..1] | [277..65] |
|
|
151.0 | [0..1] | [311..3] |
|
|
149.0 | [0..1] | [277..29] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MDDEGARKVD EKCPLCQADR YLNPNMKLLI NPECYHKMCE SCVDRIFTTG PAQCPTPGCN 60
61 KILRKA
|
| Detection Method: |  |
| Confidence: | 4.221849 |
| Match: | 1g25A |
| Description: | TFIIH Mat1 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.51043144330453 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 5.97121728620188 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 5.78935175140238 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 4.75377804653841 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 3.82459130917693 | bayes_pls_golite062009 |
| binding | 2.78710909602478 | bayes_pls_golite062009 |
| transcription regulator activity | 2.72498741013971 | bayes_pls_golite062009 |
| nucleic acid binding | 2.32387297115017 | bayes_pls_golite062009 |
| DNA binding | 2.00904221080834 | bayes_pls_golite062009 |
| transcription repressor activity | 1.98209395225978 | bayes_pls_golite062009 |
| protein binding | 1.5975811408548 | bayes_pls_golite062009 |
| transcription factor activity | 1.22579085356684 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.2126425713931 | bayes_pls_golite062009 |
| transcription factor binding | 1.11842175076436 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.03469202541773 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.90321253993065 | bayes_pls_golite062009 |
| ligase activity | 0.63517530468004 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.50197530717959 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.384990496120483 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 0.265769062717221 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.255669498391574 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.233838999434784 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| transcription activator activity | 0.126093965701234 | bayes_pls_golite062009 |
| enzyme binding | 0.104373352314595 | bayes_pls_golite062009 |
|
Region A: Residues: [67-318] |
1 11 21 31 41 51
| | | | | |
1 KFREQTFEDA QIEREVDVRK RISRIFNKGQ QEFDSLQAYN DYLEEVEILT FNLIYKIDVE 60
61 ETEEKVKQYE KQNRDSIAAN SARAAAEARI LAQNEILLKR QKQEAREAAI REHQKEKERR 120
121 EQVEQQIIFD LATSGKDPNK IIQLSDSLKK QQENIASSVS NISRSSSILL SDVQQVAEDT 180
181 TPFSPLAGEK DGSKYFSYSK NTYQDLYLEK VSHEPGRKCG FRIEDCHLRC LYEAFSGIDY 240
241 DLESLKKLEV AS
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
