| Protein: | ago1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 834 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ago1.
| Description | E-value | Query Range |
Subject Range |
|
|
995.0 | [0..6] | [833..62] |
|
|
991.0 | [0..6] | [833..23] |
|
|
990.0 | [0..6] | [833..23] |
|
|
989.0 | [0..6] | [833..22] |
|
|
988.0 | [0..6] | [833..3] |
|
Region A: Residues: [1-834] |
1 11 21 31 41 51
| | | | | |
1 MSYKPSSEIA LRPGYGGLGK QITLKANFFQ IISLPNETIN QYHVIVGDGS RVPRKQSQLI 60
61 WNSKEVKQYF GSSWMNSVYD GRSMCWSKGD IADGTIKVNI GSESHPREIE FSIQKSSKIN 120
121 LHTLSQFVNS KYSSDPQVLS SIMFLDLLLK KKPSETLFGF MHSFFTGENG VSLGGGVEAW 180
181 KGFYQSIRPN QGFMSVNVDI SSSAFWRNDS LLQILMEYTD CSNVRDLTRF DLKRLSRKFR 240
241 FLKVTCQHRN NVGTDLANRV YSIEGFSSKS ASDSFFVRRL NGEEQKISVA EYFLENHNVR 300
301 LQYPNLPCIL VKNGAMLPIE FCFVVKGQRY TAKLNSDQTA NMIRFAVQRP FERVQQIDDF 360
361 VHQMDWDTDP YLTQYGMKIQ KKMLEVPARV LETPSIRYGG DCIERPVSGR WNLRGKRFLD 420
421 PPRAPIRSWA VMCFTSTRRL PMRGIENFLQ TYVQTLTSLG INFVMKKPPV LYADIRGSVE 480
481 ELCITLYKKA EQVGNAPPDY LFFILDKNSP EPYGSIKRVC NTMLGVPSQC AISKHILQSK 540
541 PQYCANLGMK INVKVGGINC SLIPKSNPLG NVPTLILGGD VYHPGVGATG VSIASIVASV 600
601 DLNGCKYTAV SRSQPRHQEV IEGMKDIVVY LLQGFRAMTK QQPQRIIYFR DGTSEGQFLS 660
661 VINDELSQIK EACHSLSPKY NPKILVCTTQ KRHHARFFIK NKSDGDRNGN PLPGTIIEKH 720
721 VTHPYQYDFY LISHPSLQGV SVPVHYTVLH DEIQMPPDQF QTLCYNLCYV YARATSAVSL 780
781 VPPVYYAHLV SNLARYQDVT ADDTFVETSE ASMDQEVKPL LALSSKLKTK MWYM
|
| Detection Method: |  |
| Confidence: | 55.39794 |
| Match: | 1yvuA |
| Description: | Crystal structure of A. aeolicus Argonaute |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| miRNA binding | 8.69268950569308 | bayes_pls_golite062009 |
| RNA cap binding | 6.0791415062122 | bayes_pls_golite062009 |
| translation initiation factor activity | 5.50078893654345 | bayes_pls_golite062009 |
| RNA 7-methylguanosine cap binding | 5.43471478554516 | bayes_pls_golite062009 |
| ribonuclease activity | 5.30591758406946 | bayes_pls_golite062009 |
| siRNA binding | 4.26412929341885 | bayes_pls_golite062009 |
| ribonuclease III activity | 4.20335726467076 | bayes_pls_golite062009 |
| 4.10363762148891 | bayes_pls_golite062009 | |
| exoribonuclease activity | 3.71639182685131 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 3.59362615133405 | bayes_pls_golite062009 |
| exonuclease activity | 3.13676176369406 | bayes_pls_golite062009 |
| nuclease activity | 3.11657409772275 | bayes_pls_golite062009 |
| RNA binding | 3.01997241125209 | bayes_pls_golite062009 |
| transposase activity | 2.97988408226992 | bayes_pls_golite062009 |
| ribonuclease H activity | 2.91966688044755 | bayes_pls_golite062009 |
| hydrolase activity | 2.78602644579272 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.70794511869438 | bayes_pls_golite062009 |
| endonuclease activity | 2.63074055051349 | bayes_pls_golite062009 |
| endoribonuclease activity | 2.59247838057313 | bayes_pls_golite062009 |
| transcription regulator activity | 2.20855917457806 | bayes_pls_golite062009 |
| nucleic acid binding | 2.14285769817394 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 2.12039058720352 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 1.94077739152313 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 1.87431870698721 | bayes_pls_golite062009 |
| DNA binding | 1.86594005896134 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 1.74431545836806 | bayes_pls_golite062009 |
| DNA polymerase activity | 1.64519652804477 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 1.59628511603826 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 1.54576601235316 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 1.44123900197846 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.363399194272 | bayes_pls_golite062009 |
| binding | 1.35497934205068 | bayes_pls_golite062009 |
| catalytic activity | 1.25233849524628 | bayes_pls_golite062009 |
| translation regulator activity | 1.24691427875148 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.22763794139559 | bayes_pls_golite062009 |
| transcription activator activity | 1.1830013572628 | bayes_pls_golite062009 |
| transcription factor activity | 1.17659544650821 | bayes_pls_golite062009 |
| mRNA binding | 1.10473275263716 | bayes_pls_golite062009 |
| protein binding | 1.08578027658199 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.782108781904855 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 0.77421125364834 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.599626528449085 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.58055486321736 | bayes_pls_golite062009 |
| kinase activity | 0.557302038379807 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 0.48776342704945 | bayes_pls_golite062009 |
| protein kinase activity | 0.354993329967566 | bayes_pls_golite062009 |
| DNA helicase activity | 0.283883977748512 | bayes_pls_golite062009 |
| double-stranded RNA-specific ribonuclease activity | 0.222737597484808 | bayes_pls_golite062009 |
| transferase activity | 0.0868471791986259 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0701825322473915 | bayes_pls_golite062009 |
