| Protein: | csn1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 422 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csn1.
| Description | E-value | Query Range |
Subject Range |
|
|
297.0 | [0..4] | [422..49] |
|
|
297.0 | [0..4] | [422..41] |
|
|
296.0 | [0..4] | [422..36] |
|
|
294.0 | [0..4] | [422..36] |
|
|
292.0 | [0..4] | [422..20] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MSLNLLVNQE ELKRYLDEYG VWSKIFRALF VARNSKPLRS FCVHYAIKEL KEKTYNLELY 60
61 QSLFEEFQDC FENEQLDVEW VESVTFHR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [89-239] |
1 11 21 31 41 51
| | | | | |
1 KQNLEQLRRE LKAYKNNLIR ESIRAAQLDL ASFFADVGQF DSALRSYAKV REYCTNAGQI 60
61 AHLSLELMRI SIWIGNYSHV LAFGSRAKST VSAAMELTSP IYAYCGLANF CLGDYEEALA 120
121 HFLKVETDTS DGIITKTDIS VYISLCALAC W
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1na0A |
| Description: | Designed protein cTPR3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [240-422] |
1 11 21 31 41 51
| | | | | |
1 DHKRLIQELE RNEEFNALSD LDPSLRRCLQ AKCNRKYSLL LDTLQQNAQD YSLDMYLAPQ 60
61 LTNLFSLIRE RSLLDYLIPY SALPFSKIAV DFHIDENFIE KNLLEIIEAK KLNGKVDSLQ 120
121 KRVYIEPSSE PENFEDIKNI AQTSLLYSKA LYLQTLAAMN TENTDDEAPV IAQTNITAED 180
181 SQN
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.29569167054278 | bayes_pls_golite062009 |
| DNA binding | 4.90756541371868 | bayes_pls_golite062009 |
| nucleic acid binding | 4.69183445184264 | bayes_pls_golite062009 |
| transcription factor activity | 4.14166958134441 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.48053910222825 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| transcription activator activity | 2.29614125067822 | bayes_pls_golite062009 |
| transcription repressor activity | 2.19033875364989 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.48055533524841 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.33374581364046 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.27763700765562 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.12147035668008 | bayes_pls_golite062009 |
| transcription factor binding | 0.83705247708153 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.754042916649094 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.486434906547244 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.286130392009263 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.249771970501337 | bayes_pls_golite062009 |
| transferase activity | 0.064832527337659 | bayes_pls_golite062009 |
