| Protein: | Traf6-PA |
| Organism: | Drosophila melanogaster |
| Length: | 475 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Traf6-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
224.0 | [0..1] | [475..1] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MQRVQADQKP ARMHQHAHTH SHAHSLQHAE EKEHNSNEMT TNLSSTGRIA ASSSATPSAA 60
61 AGGGASGAPT PPKSLALNQN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [81-196] |
1 11 21 31 41 51
| | | | | |
1 HHYAPGSDTS GEQEEELLDS RYECAICIDW LNEPVLTSCG HRFCRSCLTA WMQKNNQCCP 60
61 MDNKRLSAEH DIFPDNYTRR EIEQLKRDCP NSSLGCSVVA SPIELHRHLP SCPYRR
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1rmdA |
| Description: | RAG1 DIMERIZATION DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 5.32809533104435 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 5.17943669371679 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 4.2482314105959 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 3.07217714843839 | bayes_pls_golite062009 |
| protein binding | 2.64803540957326 | bayes_pls_golite062009 |
| binding | 2.14721962003828 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68475305605912 | bayes_pls_golite062009 |
| nucleic acid binding | 1.453159800244 | bayes_pls_golite062009 |
| ubiquitin-ubiquitin ligase activity | 1.37401357060257 | bayes_pls_golite062009 |
| chromatin binding | 1.30140469366308 | bayes_pls_golite062009 |
| DNA binding | 1.04821660471647 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.73552256979331 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.637551805535732 | bayes_pls_golite062009 |
| ligase activity | 0.63517530468004 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.549461161056205 | bayes_pls_golite062009 |
| transcription activator activity | 0.546784009980947 | bayes_pls_golite062009 |
| transcription factor activity | 0.256724934540426 | bayes_pls_golite062009 |
| transcription factor binding | 0.25479994691323 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.159023519781458 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| enzyme binding | 0.104373352314595 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0911606411674865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.017536022609566 | bayes_pls_golite062009 |
|
Region A: Residues: [197-288] |
1 11 21 31 41 51
| | | | | |
1 QQEPQEEKCP FAKIKCDFVG RPETNQLEEH LKADMPHHMQ LMLQAFQQTA IATWQPHKPS 60
61 TSGAAVENGH GQQQLPPPPQ YANGVDEQIV QT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [289-475] |
1 11 21 31 41 51
| | | | | |
1 MYQRIVVLEQ RTREQETRLE NMQKQLRLAR QQAPVDPRYS NGTIVWRIEQ LGALVARLRA 60
61 NANNQVYSHE CYTSPHGYKF CARLNIQPRK PHVLSLHVHL MQSENDYHLD WPFKGRIKLC 120
121 MVHPADATLS QHDTIMTKPE ILAFHKPREA ISTRGFGFLE YANISNIIQL GFCADDRLLI 180
181 KIEINIV
|
| Detection Method: | |
| Confidence: | 36.39794 |
| Match: | 1kzzA |
| Description: | TNF receptor associated factor 3 (TRAF3); TRAF3 |
Matching Structure (courtesy of the PDB): |
|
