| Protein: | arm-PD, arm-PA, ... |
| Organism: | Drosophila melanogaster |
| Length: | 843 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arm-PD, arm-PA, ....
| Description | E-value | Query Range |
Subject Range |
|
|
548.0 | [0..4] | [843..1] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MSYMPAQNRT MSHNNQYNPP DLPPMVSAKE QTLMWQQNSY LGDSGIHSGA VTQVPSLSGK 60
61 EDEEMEGDPL MFDLDTGFPQ NFTQDQVDDM NQQLSQTRSQ RVRAAMFPET LEEGIEIPST 120
121 QFDPQQPTAV QRL
|
| Detection Method: |  |
| Confidence: | 77.69897 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [134-689] |
1 11 21 31 41 51
| | | | | |
1 SEPSQMLKHA VVNLINYQDD AELATRAIPE LIKLLNDEDQ VVVSQAAMMV HQLSKKEASR 60
61 HAIMNSPQMV AALVRAISNS NDLESTKAAV GTLHNLSHHR QGLLAIFKSG GIPALVKLLS 120
121 SPVESVLFYA ITTLHNLLLH QDGSKMAVRL AGGLQKMVTL LQRNNVKFLA IVTDCLQILA 180
181 YGNQESKLII LASGGPNELV RIMRSYDYEK LLWTTSRVLK VLSVCSSNKP AIVDAGGMQA 240
241 LAMHLGNMSP RLVQNCLWTL RNLSDAATKV EGLEALLQSL VQVLGSTDVN VVTCAAGILS 300
301 NLTCNNQRNK ATVCQVGGVD ALVRTIINAG DREEITEPAV CALRHLTSRH VDSELAQNAV 360
361 RLNYGLSVIV KLLHPPSRWP LIKAVIGLIR NLALCPANHA PLREHGAIHH LVRLLMRAFQ 420
421 DTERQRSSIA TTGSQQPSAY ADGVRMEEIV EGTVGALHIL ARESHNRALI RQQSVIPIFV 480
481 RLLFNEIENI QRVAAGVLCE LAADKEGAEI IEQEGATGPL TDLLHSRNEG VATYAAAVLF 540
541 RMSEDKPQDY KKRLSI
|
| Detection Method: | |
| Confidence: | 93.522879 |
| Match: | 2gl7A |
| Description: | No description for 2gl7A was found. |
| Term | Confidence | Notes |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| protein transporter activity | 3.05338750264476 | bayes_pls_golite062009 |
| actin binding | 2.8014924948341 | bayes_pls_golite062009 |
| protein binding | 2.78733902345842 | bayes_pls_golite062009 |
| nucleic acid binding | 2.74745843355294 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.61566088685247 | bayes_pls_golite062009 |
| transporter activity | 2.48700774379895 | bayes_pls_golite062009 |
| I-SMAD binding | 2.47815563591011 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.26725422172281 | bayes_pls_golite062009 |
| transcription regulator activity | 2.16673352512615 | bayes_pls_golite062009 |
| RPTP-like protein binding | 1.98880011077407 | bayes_pls_golite062009 |
| DNA binding | 1.95242774903625 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 1.83254788740042 | bayes_pls_golite062009 |
| transcription activator activity | 1.48948412083328 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.28481004323799 | bayes_pls_golite062009 |
| transcription factor activity | 1.20660383756339 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 1.15447282085461 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.09652988954158 | bayes_pls_golite062009 |
| molecular transducer activity | 1.05960420053443 | bayes_pls_golite062009 |
| signal transducer activity | 1.05960420053443 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 0.979928797807954 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 0.611068932532731 | bayes_pls_golite062009 |
| hormone receptor binding | 0.601092027102069 | bayes_pls_golite062009 |
| protein phosphatase binding | 0.56816346673047 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 0.550877840117317 | bayes_pls_golite062009 |
| androgen receptor binding | 0.547783586885111 | bayes_pls_golite062009 |
| structural molecule activity | 0.440301695287117 | bayes_pls_golite062009 |
| phosphatase binding | 0.41064504734296 | bayes_pls_golite062009 |
| RNA binding | 0.40024158562931 | bayes_pls_golite062009 |
| clathrin binding | 0.35775052108553 | bayes_pls_golite062009 |
| profilin binding | 0.282419977874124 | bayes_pls_golite062009 |
| signal sequence binding | 0.27824906981293 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.252495966234234 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.248585912061178 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.226380819487924 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.217517113570989 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.178770060806735 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.175241020572885 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.174922130116569 | bayes_pls_golite062009 |
| peptide binding | 0.17066729499393 | bayes_pls_golite062009 |
| cadherin binding | 0.1400783779596 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.100181463251306 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0635404099346928 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0548082069333885 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.052195223119721 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0405268469927988 | bayes_pls_golite062009 |
| transcription factor binding | 0.0221966060394205 | bayes_pls_golite062009 |
|
Region A: Residues: [690-843] |
1 11 21 31 41 51
| | | | | |
1 ELTNSLLRED NNIWANADLG MGPDLQDMLG PEEAYEGLYG QGPPSVHSSH GGRAFHQQGY 60
61 DTLPIDSMQG LEISSPVGGG GAGGAPGNGG AVGGASGGGG NIGAIPPSGA PTSPYSMDMD 120
121 VGEIDAGALN FDLDAMPTPP NDNNNLAAWY DTDC
|
| Detection Method: | |
| Confidence: | 20.0 |
| Match: | 1qgkA |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
