| Protein: | Rel-PB, Rel-PC, ... |
| Organism: | Drosophila melanogaster |
| Length: | 971 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rel-PB, Rel-PC, ....
| Description | E-value | Query Range |
Subject Range |
|
|
619.0 | [0..68] | [880..1] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MNMNQYYDLD NGKNVMFMND ASSTSGYSSS TSPNSTNRSF SPAHSPKTME LQTDFANLNL 60
61 PGGNSPHQPP MANSPYQNQL LNNGGICQLG ATN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [94-456] |
1 11 21 31 41 51
| | | | | |
1 LINSTGVSFG VANVTSFGNM YMDHQYFVPA PATVPPSQNF GYHQNGLASD GDIKHVPQLR 60
61 IVEQPVEKFR FRYKSEMHGT HGSLNGANSK RTPKTFPEVT LCNYDGPAVI RCSLFQTNLD 120
121 SPHSHQLVVR KDDRDVCDPH DLHVSKERGY VAQFINMGII HTAKKYIFEE LCKKKQDRLV 180
181 FQMNRRELSH KQLQELHQET EREAKDMNLN QVRLCFEAFK IEDNGAWVPL APPVYSNAIN 240
241 NRKSAQTGEL RIVRLSKPTG GVMGNDELIL LVEKVSKKNI KVRFFEEDED GETVWEAYAK 300
301 FRESDVHHQY AIVCQTPPYK DKDVDREVNV YIELIRPSDD ERSFPALPFR YKPRSVIVSR 360
361 KRR
|
| Detection Method: | |
| Confidence: | 108.0 |
| Match: | 1svcP |
| Description: | p50 subunit of NF-kappa B transcription factor; p50 subunit of NF-kappa B (NFKB), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.42929256050781 | bayes_pls_golite062009 |
| DNA binding | 5.31133900263778 | bayes_pls_golite062009 |
| nucleic acid binding | 5.16722510757739 | bayes_pls_golite062009 |
| transcription factor activity | 4.50526425463039 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.91938513552138 | bayes_pls_golite062009 |
| transcription activator activity | 3.89749713667575 | bayes_pls_golite062009 |
| binding | 3.82913410895101 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.14317875446423 | bayes_pls_golite062009 |
| protein binding | 2.61625563263605 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.87544096847314 | bayes_pls_golite062009 |
| DNA strand annealing activity | 1.81456840545282 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.68237504321416 | bayes_pls_golite062009 |
| single-stranded DNA binding | 1.49080128448961 | bayes_pls_golite062009 |
| chromatin binding | 1.28001279726096 | bayes_pls_golite062009 |
| transcription repressor activity | 1.27337392672914 | bayes_pls_golite062009 |
| transcription factor binding | 0.628837188707778 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.35905469882415 | bayes_pls_golite062009 |
| protein dimerization activity | 0.0889583851427092 | bayes_pls_golite062009 |
| chitin binding | 0.0880651619819113 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.0676214219421661 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.0676214219421661 | bayes_pls_golite062009 |
| cation channel activity | 0.0318083563912285 | bayes_pls_golite062009 |
|
Region A: Residues: [457-543] |
1 11 21 31 41 51
| | | | | |
1 RTGSSANSSS SGTESSNNSL DLPKTLGLAQ PPNGLPNLSQ HDQTISEEFG REKHLNEFIA 60
61 SEDFRKLIEH NSSDLEKICQ LDMGELQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| protein binding | 2.69918165732603 | bayes_pls_golite062009 |
| binding | 2.60916417202222 | bayes_pls_golite062009 |
| transcription regulator activity | 2.37103377984038 | bayes_pls_golite062009 |
| nucleic acid binding | 1.8957142857582 | bayes_pls_golite062009 |
| DNA binding | 1.78305438715057 | bayes_pls_golite062009 |
| transcription activator activity | 1.6418915400902 | bayes_pls_golite062009 |
| transcription factor activity | 1.2667825651547 | bayes_pls_golite062009 |
| transcription factor binding | 1.06366405671195 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.949906091645366 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.590503097160372 | bayes_pls_golite062009 |
|
Region A: Residues: [544-611] |
1 11 21 31 41 51
| | | | | |
1 HDGHNRAEVP SHRNRTIKCL DDLFEIYKQD RISPIKISHH KVEKWFIEHA LNNYNRDTLL 60
61 HEVISHKK
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 1sw6A |
| Description: | Swi6 ankyrin-repeat fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [612-971] |
1 11 21 31 41 51
| | | | | |
1 DKLKLAIQTI QVMNYFNLKD VVNSTLNADG DSALHVACQQ DRAHYIRPLL GMGCNPNLKN 60
61 NAGNTPLHVA VKEEHLSCVE SFLNGVPTVQ LDLSLTNDDG LTPLHMAIRQ NKYDVAKKLI 120
121 SYDRTSISVA NTMDGNNALH MAVLEQSVEL LVLILDAQNE NLTDILQAQN AAGHTPLELA 180
181 ERKANDRVVQ LLKNVYPEKG ELAMTWIPCK VKEEIDSSSD ESSDAGQLEI KSEEMDIETK 240
241 DEDSVELDLS SGPRRQKDES SRDTEMDNNK LQLLLKNKFI YDRLCSLLNQ PLGHGSDPQD 300
301 RKWMQLARQT HLKQFAFIWL GAEDLLDHVK RKGASVEFST FARALQAVDP QAYALLVNPT 360
361
|
| Detection Method: | |
| Confidence: | 83.045757 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.69918165732603 | bayes_pls_golite062009 |
| binding | 2.60916417202222 | bayes_pls_golite062009 |
| transcription regulator activity | 2.37103377984038 | bayes_pls_golite062009 |
| nucleic acid binding | 1.8957142857582 | bayes_pls_golite062009 |
| DNA binding | 1.78305438715057 | bayes_pls_golite062009 |
| transcription activator activity | 1.6418915400902 | bayes_pls_golite062009 |
| transcription factor activity | 1.2667825651547 | bayes_pls_golite062009 |
| transcription factor binding | 1.06366405671195 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.949906091645366 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.590503097160372 | bayes_pls_golite062009 |
