| Protein: | cg-PA, cg-PD |
| Organism: | Drosophila melanogaster |
| Length: | 671 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cg-PA, cg-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
811.0 | [0..19] | [662..323] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MCAAQNPPPF GYTWGFADNG NRAAESVLEI SPNINYTVSG ESMPYLLSTD GSLAVQKDVK 60
61 GLTAGGKNNV VRRMFVVNDP SFPPGTQRVI TAGGASTVVK KQDNNQQVLS LDKNCDILPG 120
121 ISVQVQKVIQ GLEDNEDSQG EAPN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [145-350] |
1 11 21 31 41 51
| | | | | |
1 LKLEPGTLEL SPKTELQESM HFSETDATIK KERPYSCDEC GKSFLLKHHL TTHARVHTGE 60
61 RPHICTHCGK SFAHKHCLNT HLLLHSTERP YQCQECKKSF TLKHHLLTHS RVHSRERPFV 120
121 CQECGRAFPL KRHLVTHSKF HAGERPYVCE ECGESFAQEN HLIMHSRFHG SLNPFVCAEC 180
181 GASFPRKFQL VNHGRIHGKI PHSCTV
|
| Detection Method: | |
| Confidence: | 60.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [351-515] |
1 11 21 31 41 51
| | | | | |
1 CGKEFLQKRT LVSHMRRVHT GEQAHPCVSC GEGFLTKAEL HQHVRTAHNG VNPNTSSATI 60
61 IANQQLQQAH HHQAGQQTHP QTITVVSNPG NSTLLTVSTT DANGVARPQF VCRECGSAFN 120
121 SREALALHLR LHTGDKSLMT DLCALTAALP GHFLSTASLN PGTVV
|
| Detection Method: | |
| Confidence: | 19.09691 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.48624530884061 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.18599503594288 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [516-671] |
1 11 21 31 41 51
| | | | | |
1 TANPNLVGQS PVPVQIISST GQVMSQTTLV QAANSTHPQA VVTAVPTMPV HGQQQHLQHV 60
61 AQQQQQQQQQ QQQQQQHVVS VAPANKPKSH FCASCGKGFA AKHGLMQHNR RHPNGGCTVR 120
121 THVCECGKAF FQKNHLMLHQ RQHLETKPAI SQQQVC
|
| Detection Method: | |
| Confidence: | 5.045757 |
| Match: | 1un6B |
| Description: | THE CRYSTAL STRUCTURE OF A ZINC FINGER - RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION |
Matching Structure (courtesy of the PDB): |
|
