| Protein: | SSR2_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 503 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSR2_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
501.0 | [0..3] | [492..96] |
|
|
497.0 | [0..5] | [493..118] |
|
|
486.0 | [0..2] | [493..121] |
|
|
436.0 | [0..2] | [503..89] |
|
|
427.0 | [0..2] | [503..108] |
|
|
427.0 | [0..4] | [489..431] |
|
|
424.0 | [0..3] | [493..104] |
|
|
408.0 | [0..2] | [503..94] |
|
|
407.0 | [0..3] | [503..138] |
|
|
395.0 | [0..5] | [496..134] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MTLDQVRIPF LVEQTYPIIV PSYAGWFDMS KIHDIERRSN PEFFNGKSPL KTPSIYKDYR 60
61 DFMINSYRLE PNEYLTVTAC RRNLVGDVCA IIRVHAFLEQ WGLINYQIDP ETRPAFRLPP 120
121 ISGHVQAISN TPIVTQEMLA QHPPPSTVGG SSSQEFVK
|
| Detection Method: |  |
| Confidence: | 35.0 |
| Match: | 2fq3A |
| Description: | Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [159-244] |
1 11 21 31 41 51
| | | | | |
1 LEEKHYSPSL NAMEQTSPKE EDEKSDKVPR VDKVCFTCGV NCSQTWYHNL KNKKYDICPN 60
61 CYKQGRFSSS FNSSDFLCMD AIDFNH
|
| Detection Method: | |
| Confidence: | 2.54 |
| Match: | 2dipA |
| Description: | No description for 2dipA was found. |
| Term | Confidence | Notes |
| binding | 2.70912934275371 | bayes_pls_golite062009 |
| transcription regulator activity | 2.69310847474187 | bayes_pls_golite062009 |
| protein binding | 2.53639372327734 | bayes_pls_golite062009 |
| nucleic acid binding | 2.31493818053907 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.01832887083768 | bayes_pls_golite062009 |
| DNA binding | 2.0126776192216 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91556680192956 | bayes_pls_golite062009 |
| transcription activator activity | 1.44069932994662 | bayes_pls_golite062009 |
| transcription factor activity | 1.23220438818624 | bayes_pls_golite062009 |
| transcription factor binding | 0.987482369490121 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.92569568619287 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.876703944945945 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.842690858803658 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.740437317894105 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.308921486763847 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.190105232754922 | bayes_pls_golite062009 |
| catalytic activity | 0.168711389690753 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.137379573046724 | bayes_pls_golite062009 |
| ligase activity | 0.130845594476754 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.121420290407334 | bayes_pls_golite062009 |
|
Region A: Residues: [245-375] |
1 11 21 31 41 51
| | | | | |
1 DEEKPWSNQE TLLLLEAIET YGDDWNQIAL HVGSRTKEQC LIHFLQIPIE DPYRQKLQGD 60
61 FSPFKKGFLP FDENENPVLS TLTYLASIVQ QGMKERKQNE SVKQGETSFG NSEFKNPLER 120
121 VAYYALKSAA Q
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1a5jA |
| Description: | CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.40149699217445 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.40149699217445 | bayes_pls_golite062009 |
| protein deacetylase activity | 1.23680480131205 | bayes_pls_golite062009 |
| histone deacetylase activity | 1.18932416576802 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| histone binding | 0.557787598121402 | bayes_pls_golite062009 |
| deacetylase activity | 0.530687254192222 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.284650049512347 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.2679415219517 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.236060274498333 | bayes_pls_golite062009 |
| N-acyltransferase activity | 0.212884313176726 | bayes_pls_golite062009 |
|
Region A: Residues: [376-503] |
1 11 21 31 41 51
| | | | | |
1 KAKLIAAFEN RQLRRLVFSL IQAQLEKLQL KMKVLEQLEK MCSLELSELD LRGKNLLLSR 60
61 LSTKKMLLAF NKKLEEAVNL GGEDGLKIID DLMSTEHAEA LLTFEMPTAT TVSPLSKQYP 120
121 DKFRTIAL
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 1zvuA |
| Description: | Structure of the full-length E. coli ParC subunit |
Matching Structure (courtesy of the PDB): |
|
