| Protein: | XRN2_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 991 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XRN2_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
1077.0 | [0..1] | [990..1] |
|
|
1054.0 | [0..1] | [959..1] |
|
|
1052.0 | [0..1] | [991..1] |
|
|
1052.0 | [0..1] | [990..1] |
|
|
1052.0 | [0..1] | [988..1] |
|
|
1050.0 | [0..1] | [897..1] |
|
|
1040.0 | [0..1] | [991..16] |
|
|
1026.0 | [0..1] | [906..1] |
|
|
1019.0 | [0..1] | [895..1] |
|
|
1017.0 | [0..1] | [991..1] |
|
Region A: Residues: [1-506] |
1 11 21 31 41 51
| | | | | |
1 MGVPALFRLL SRKFAKVITP VIEAPTEKLP DGTEIEPDLS LPNPNGVECD NLYLDMNGIV 60
61 HPCSHPEDRP APETEDEMMV AVFEYTDRIL AMVRPRQLLF IAIDGVAPRA KMNQQRSRRF 120
121 RSSREAALKE EELQAFIEEA KQQGIPIDEN ATKKKSWDSN CITPGTPFMD TLAKSLRYYI 180
181 INKLNSDPCW RNVRFILSDA SVPGEGEHKI MEFIRSQRVK PEYDPNTHHV VYGLDADLIM 240
241 LGLATHEPHF RVLREDVFFQ QGSTKKTKEE RLGIKRLDDV SETNKVPVKK PFIWLNVSIL 300
301 REYLEVELYV PNLPFPFDLE RAIDDWVFFI FFVGNDFLPH LPSLDIRDGA VERLTEIWRA 360
361 SLPHMGGYLT LDGSVNLARA EVILSAVGNQ EDDIFKRLKQ QEDRRNENYR RRQQRESNQE 420
421 SESYVDNVVI QRSVETQSTE VVTSSKSTSV DTKPPKKTQK IDAPAPVDLV NLSEKTSNRS 480
481 LGATNRELIN NRAANRLGLS REAAAV
|
| Detection Method: |  |
| Confidence: | 1.58 |
| Match: | 1ul1X |
| Description: | Crystal structure of the human FEN1-PCNA complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 2.74395891269151 | bayes_pls_golite062009 |
| binding | 2.58539672241253 | bayes_pls_golite062009 |
| nucleic acid binding | 2.54722210455433 | bayes_pls_golite062009 |
| endonuclease activity | 1.2840172881923 | bayes_pls_golite062009 |
| flap endonuclease activity | 1.17726395799783 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 1.12391156671522 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 1.11025090301954 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 1.07360773846975 | bayes_pls_golite062009 |
| protein binding | 0.695466920831325 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.657224027340282 | bayes_pls_golite062009 |
| catalytic activity | 0.585392957294978 | bayes_pls_golite062009 |
|
Region A: Residues: [507-710] |
1 11 21 31 41 51
| | | | | |
1 SSVNKLAASA LKAQLVSNET LQNVPLEDSI ASSSAYEDTD SIESSTPVVH PIDTKVSNVG 60
61 QKRKAPDSTE ENENTDTVRL YEPGYRERYY EQKFHISPDE PEKIREAVKH YVHGLCWVLL 120
121 YYYQGCPSWT WYYPYHYAPF AADFKDLASI DVKFELNQPF KPYEQLLGVL PAASKNNLPE 180
181 KLQTLMTDEN SEIIDFYPEN FTID
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [711-778] |
1 11 21 31 41 51
| | | | | |
1 LNGKKFEWQG VALLPFIDEN RLLNAVSKIY PQLTEEESKR NEDGSTLLFI SEHHPMFSEL 60
61 VKQLYSKK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [779-991] |
1 11 21 31 41 51
| | | | | |
1 RQGKPLKLSG KMAHGLFGKV NTNDSVIPNV SVQCPIDVTS ADALQKYGSI DDNQSISLVF 60
61 EVPKSHFVHK SMLLRGVKMP NRVLTPEDIN QVRAERSFSS RRNNGNSYRG GHQSYGVRRS 120
121 YQSQSYSSRQ SYTGVTNGFA NGGVQPPWSG NGNFPRSNAS YNSRGGHEGY GGRSRGGGYS 180
181 NGPPAGNHYS SNRGKGYGYQ RESYNNNNRN GYY
|
| Detection Method: | |
| Confidence: | 15.30103 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
