YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: XRN3_ARATH

General Information:
Name(s) found: XRN3_ARATH [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1020 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: miRNA catabolic process [IMP]
    Molecular Function: 5'-3' exoribonuclease activity [IGI][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPSFYRWL AEKYPLLVAD VIEEEPVEIE GIKIPVDTSK PNPNNLEYDN LYLDMNGIIH  60
   61 PCFHPEDRPS PTTFEEVFQC MFDYIDRLFV MVRPRKLLYM AIDGVAPRAK MNQQRSRRFR 120
  121 SAKDASDAAA EEERLREEFE REGRRLPPKV DSQVFDSNVI TPGTEFMGVL SIALQYYVHL 180
  181 RLNHDVGWKN IKVILSDANV PGEGEHKIMS YIRLQRNLPG FDPNTRHCLY GLDADLIMLG 240
  241 LATHEVHFSI LREVVYTPGQ QERCFLCGQM GHFASNCEGK PKKRAGESDE KGDGNDFVKK 300
  301 PYQFLHIWVL REYLELEMRI PNPPFEIDLE RIVDDFIFIC FFVGNDFLPH MPTLEIREGA 360
  361 INLLMAVYKK EFRSFDGYLT DGCKPNLKRV EQFIQAVGSF EDKIFQKRAM QHQRQAERVK 420
  421 RDKAGKATKR MDDEAPTVQP DLVPVARFSG SRLASAPTPS PFQSNDGRSA PHQKVRRLSP 480
  481 GSSVGAAIVD VENSLESDER ENKEELKTKL KELIREKSDA FNSDTTEEDK VKLGQPGWRE 540
  541 RYYEEKFSVV TPEEMERVRK DVVLKYTEGL CWVMHYYMEG VCSWQWFYPY HYAPFASDLK 600
  601 DLGEMDIKFE LGTPFKPFNQ LLGVFPAASS HALPERYRTL MTDPNSPIID FYPTDFEVDM 660
  661 NGKRFSWQGI AKLPFIDERR LLEAVSEVEF TLTDEEKRRN SRMCDMLFIA TSHRLAELVF 720
  721 SLDNHCRQLS ARERVDFKVK IKPKLSDGMN GYLTPCSGET HPPVFRSPME GMEDILTNQV 780
  781 ICCIYRLPDA HEHITRPPPG VIFPKKTVDI GDLKPPPALW HEDNGRRPMH NNHGMHNNHG 840
  841 MHNNQGRQNP PGSVSGRHLG NAAHRLVSNS LQMGTDRYQT PTDVPAPGYG YNPPQYVPPI 900
  901 PYQHGGYMAP PGAQGYAQPA PYQNRGGYQP RGPSGRFPSE PYQSQSREGQ HASRGGGYSG 960
  961 NHQNQHQQQQ WHGQGGSEQN NPRGYNGQHH HQQGGDHDRR GRGRGSHHHH DQGGNPRHRY1020
 1021

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..161] MSA 3.108967 View MSA. No confident structure predictions are available.
    2 View Details [162..403] deduced N/A No confident structure predictions are available.
    3 View Details [404..526] deduced N/A No confident structure predictions are available.
    4 View Details [527..672] MSA 1.093948 View MSA. No confident structure predictions are available.
    5 View Details [673..1020] PSI-BLAST 25.221849 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle