| Protein: | Dscam-PAB |
| Organism: | Drosophila melanogaster |
| Length: | 2031 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAB.
| Description | E-value | Query Range |
Subject Range |
|
|
1497.0 | [0..3] | [2031..3] |
|
Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVV
|
| Detection Method: |  |
| Confidence: | 79.09691 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [138-810] |
1 11 21 31 41 51
| | | | | |
1 NQYYEAEVVS EYVIRGNTAV LKCTIPSFVA DFLRVEAWVA SDGTEYAPEE DFDGKYLVLP 60
61 SGELHIREVG PEDGYKSYQC RTKHRLTGET RLSATKGRLV ITEPVGSVGP KISVGERLRD 120
121 AGAPSKSTLT LFCPAQSYPV PSFRWYKFIE GTTRKQAVVL NDRVKQVSGT LIIKDAVVED 180
181 SGKYLCVVNN SVGGESVETV LTVTAPLSAK IDPPTQTVDF GRPAVFTCQY TGNPIKTVSW 240
241 MKDGKAIGHS EPVLRIESVK KEDKGMYQCF VRNDQESAEA SAELKLGGRF DPPVIRQAFQ 300
301 EETMEPGPSV FLKCVAGGNP TPEISWELDG KKIANNDRYQ VGQYVTVNGD VVSYLNITSV 360
361 HANDGGLYKC IAKSKVGVAE HSAKLNVYGL PYIRQMEKKA IVAGETLIVT CPVAGYPIDS 420
421 IVWERDNRAL PINRKQKVFP NGTLIIENVE RNSDQATYTC VAKNQEGYSA RGSLEVQVMA 480
481 PPKITPFSFG EEPANVEDSV SVTCLISTGD LPIDIEWFFN EYGISSYSGI SVMKGGKRNS 540
541 VLSIDSVQAR HAGNYSCRAK NHAAAVNYTT DLIVNVPPRW ILEPTDKAFA QGSDAKVECK 600
601 ADGFPKPQVT WKKAVGDTPG EYKDLKKSDN IRVEEGTLHV DNIQKTNEGY YLCEAINGIG 660
661 SGLSAVIMIS VQA
|
| Detection Method: | |
| Confidence: | 60.522879 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [811-1349] |
1 11 21 31 41 51
| | | | | |
1 PPEFTEKLRN QTARRGEPAV LQCEAKGEKP IGILWNMNNM RLDPKNDNRY TIREEILSTG 60
61 VMSSLSIKRT ERSDSALFTC VATNAFGSDD ASINMIVQEV PEMPYALKVL DKSGRSVQLS 120
121 WAQPYDGNSP LDRYIIEFKR SRASWSEIDR VIVPGHTTEA QVQKLSPATT YNIRIVAENA 180
181 IGTSQSSEAV TIITAEEAPS GKPQNIKVEP VNQTTMRVTW KPPPRTEWNG EILGYYVGYK 240
241 LSNTNSSYVF ETINFITEEG KEHNLELQNL RVYTQYSVVI QAFNKIGAGP LSEEEKQFTA 300
301 EGTPSQPPSD TACTTLTSQT IRVGWVSPPL ESANGVIKTY KVVYAPSDEW YDETKRHYKK 360
361 TASSDTVLHG LKKYTNYTMQ VLATTAGGDG VRSVPIHCQT EPDVPEAPTD VKALVMGNAA 420
421 ILVSWRPPAQ PNGIITQYTV YSKAEGAETE TKTQKVPHYQ MSFEATELEK NKPYEFWVTA 480
481 STTIGEGQQS KSIVAMPSDQ VPAKIASFDD TFTATFKEDA KMPCLAVGAP QPEITWKIK
|
| Detection Method: | |
| Confidence: | 26.69897 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1350-1481] |
1 11 21 31 41 51
| | | | | |
1 GVEFSANDRM RVLPDGSLLI KSVNRQDAGD YSCHAENSIA KDSITHKLIV LAPPQSPHVT 60
61 LSATTTDALT VKLKPHEGDT APLHGYTLHY KPEFGEWETS EVSVDSQKHN IEGLLCGSRY 120
121 QVYATGFNNI GA
|
| Detection Method: | |
| Confidence: | 34.0 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [1482-1603] |
1 11 21 31 41 51
| | | | | |
1 GEASDILNTR TKGQKPKLPE KPRFIEVSSN SVSLHFKAWK DGGCPMSHFV VESKKRDQIE 60
61 WNQISNNVKP DNNYVVLDLE PATWYNLRIT AHNSAGFTVA EYDFATLTVT GGTIAPLDDG 120
121 SG
|
| Detection Method: | |
| Confidence: | 11.39794 |
| Match: | 1x5kA |
| Description: | The solution structure of the sixth fibronectin type III domain of human Neogenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telethonin binding | 5.81747667416248 | bayes_pls_golite062009 |
| structural constituent of muscle | 5.71979489668015 | bayes_pls_golite062009 |
| transmembrane receptor activity | 4.81256300373074 | bayes_pls_golite062009 |
| ankyrin binding | 4.69755754047169 | bayes_pls_golite062009 |
| receptor activity | 4.66147271961356 | bayes_pls_golite062009 |
| alpha-actinin binding | 4.57951951779666 | bayes_pls_golite062009 |
| actinin binding | 4.57900103206288 | bayes_pls_golite062009 |
| cytokine binding | 4.43581512268554 | bayes_pls_golite062009 |
| cytokine receptor activity | 4.08668869714207 | bayes_pls_golite062009 |
| growth factor binding | 4.06808996928726 | bayes_pls_golite062009 |
| molecular transducer activity | 3.69234048247377 | bayes_pls_golite062009 |
| signal transducer activity | 3.69234048247377 | bayes_pls_golite062009 |
| protein binding | 3.24522318184038 | bayes_pls_golite062009 |
| binding | 3.12471204223368 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 2.32179186005318 | bayes_pls_golite062009 |
| peptide hormone binding | 2.12033076929638 | bayes_pls_golite062009 |
| axon guidance receptor activity | 2.01367445237355 | bayes_pls_golite062009 |
| prolactin receptor activity | 1.9556649101819 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.85720106085239 | bayes_pls_golite062009 |
| interleukin-2 binding | 1.67132604890013 | bayes_pls_golite062009 |
| myosin light chain kinase activity | 1.49217960276915 | bayes_pls_golite062009 |
| protein kinase activity | 1.42856560840953 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32813363771214 | bayes_pls_golite062009 |
| receptor binding | 1.31676259534833 | bayes_pls_golite062009 |
| transcription regulator activity | 1.31663344632755 | bayes_pls_golite062009 |
| actin binding | 1.21472460452555 | bayes_pls_golite062009 |
| DNA binding | 1.2006039770643 | bayes_pls_golite062009 |
| growth hormone receptor activity | 1.15929762138929 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.15899955607967 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.12142142875217 | bayes_pls_golite062009 |
| kinase activity | 1.11027658115625 | bayes_pls_golite062009 |
| ciliary neurotrophic factor receptor activity | 1.07748328484506 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 0.99058387466784 | bayes_pls_golite062009 |
| structural molecule activity | 0.94240190391222 | bayes_pls_golite062009 |
| peptide binding | 0.92031154055894 | bayes_pls_golite062009 |
| interleukin-6 receptor activity | 0.888638861691021 | bayes_pls_golite062009 |
| interleukin-6 binding | 0.888638861691021 | bayes_pls_golite062009 |
| protein dimerization activity | 0.86564366658585 | bayes_pls_golite062009 |
| cell surface binding | 0.792329562040096 | bayes_pls_golite062009 |
| heparin binding | 0.7054081997714 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.703490254739121 | bayes_pls_golite062009 |
| collagen binding | 0.688581536921572 | bayes_pls_golite062009 |
| kinase binding | 0.65927255037265 | bayes_pls_golite062009 |
| oncostatin-M receptor activity | 0.628488391922279 | bayes_pls_golite062009 |
| leukemia inhibitory factor receptor activity | 0.628488391922279 | bayes_pls_golite062009 |
| enzyme binding | 0.60195860585095 | bayes_pls_golite062009 |
| identical protein binding | 0.564711394496051 | bayes_pls_golite062009 |
| transcription factor activity | 0.557290274937694 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 0.554350228628563 | bayes_pls_golite062009 |
| hormone binding | 0.49524185948356 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 0.46168925186147 | bayes_pls_golite062009 |
| transferase activity | 0.432850266451294 | bayes_pls_golite062009 |
| polysaccharide binding | 0.4326581122899 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.40600177052491 | bayes_pls_golite062009 |
| protein kinase binding | 0.405060010394646 | bayes_pls_golite062009 |
| interleukin-7 binding | 0.301052531308189 | bayes_pls_golite062009 |
| pattern binding | 0.30071837231983 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.1430595594485 | bayes_pls_golite062009 |
| transcription activator activity | 0.135753557343301 | bayes_pls_golite062009 |
| actin filament binding | 0.135484838710405 | bayes_pls_golite062009 |
| protein homodimerization activity | 0.116391819218123 | bayes_pls_golite062009 |
| interleukin-2 receptor activity | 0.115337814289139 | bayes_pls_golite062009 |
| integrin binding | 0.0873424694168858 | bayes_pls_golite062009 |
| transcription factor binding | 0.075900818564989 | bayes_pls_golite062009 |
|
Region A: Residues: [1604-1784] |
1 11 21 31 41 51
| | | | | |
1 HGNVHTRIRL PAWMPEWLDL NFMVPLIATV VVVAVGICVV CVALSRRRAD DMRGGQKDVY 60
61 YDVVYNQTMG PGATLDKRRP DLRDELGYIA PPNRKLPPVP GSNYNTCDRI KRGRGGLRSN 120
121 HSTWDPRRNP NLYEELKAPP VPMHGNHYGH AHGNAECHYR HPGMEDEICP YATFHLLGFR 180
181 E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1785-2031] |
1 11 21 31 41 51
| | | | | |
1 EMDPTKAMNF QTFPHQNGHA GPVPGHAGTM LPPGHPGHVH SRSGSQSMPR ANRYQRKNSQ 60
61 GGQSSIYTPA PEYDDPANCA EEDQYRRYTR VNSQGGSLYS GPGPEYDDPA NCAPEEDQYG 120
121 SQYGGPYGQP YDHYGSRGSM GRRSIGSARN PGNGSPEPPP PPPRNHDMSN SSFNDSKESN 180
181 EISEAECDRD HGPRGNYGAV KRSPQPKDQR TTEEMRKLIE RNETGPKQLQ LQQANGAGFT 240
241 AYDTMAV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
