| Protein: | Dscam-PAA |
| Organism: | Drosophila melanogaster |
| Length: | 2016 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAA.
| Description | E-value | Query Range |
Subject Range |
|
|
1537.0 | [0..3] | [2016..3] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVN
|
| Detection Method: |  |
| Confidence: | 79.39794 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [139-817] |
1 11 21 31 41 51
| | | | | |
1 QYYEAEVVSE YVIRGNTAVL KCTIPSFVAD FLRVEAWVAS DGTEYAPEED FDGKYLVLPS 60
61 GELHIREVGP EDGYKSYQCR TKHRLTGETR LSATKGRLVI TEPVGSVGPK VEIKDKVGIF 120
121 VAKSNSSLAL LCPAQSYPIP AFRWYKFIEG TTRKQAVVLN DRVKQVSGTL IIKDAVVEDS 180
181 GKYLCVVNNS VGGESVETVL TVTAPLSAKI DPPTQTVDFG RPAVFTCQYT GNPIKTVSWM 240
241 KDGKAIGHSE PVLRIESVKK EDKGMYQCFV RNDQESAEAS AELKLGGRFD PPVIRQAFQE 300
301 ETMEPGPSVF LKCVAGGNPT PEISWELDGK KIANNDRYQV GQYVTVNGDV VSYLNITSVH 360
361 ANDGGLYKCI AKSKVGVAEH SAKLNVYGLP YIRQMEKKAI VAGETLIVTC PVAGYPIDSI 420
421 VWERDNRALP INRKQKVFPN GTLIIENVER NSDQATYTCV AKNQEGYSAR GSLEVQVMVL 480
481 PQIVPFDFGE ETVNELDMVS ASCTVNKGDL PIDVAWTKNG GRVYTNDGIV VTKTSTRMSV 540
541 LSIESARARH AGNYSCVATN NAGETRQWAV LAVNVPPRWI LEPTDKAFAQ GSDAKVECKA 600
601 DGFPKPQVTW KKAVGDTPGE YKDLKKSDNI RVEEGTLHVD NIQKTNEGYY LCEAINGIGS 660
661 GLSAVIMISV QAPPEFTEK
|
| Detection Method: | |
| Confidence: | 58.045757 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [818-847] |
1 11 21 31 41 51
| | | | | |
1 LRNQTARRGE PAVLQCEAKG EKPIGILWNM
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 2cryA |
| Description: | Solution structure of the fifth ig-like domain of human kin of IRRE like 3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [848-1375] |
1 11 21 31 41 51
| | | | | |
1 NNMRLDPKND NRYTIREEIL STGVMSSLSI KRTERSDSAL FTCVATNAFG SDDASINMIV 60
61 QEVPEMPYAL KVLDKSGRSV QLSWAQPYDG NSPLDRYIIE FKRSRASWSE IDRVIVPGHT 120
121 TEAQVQKLSP ATTYNIRIVA ENAIGTSQSS EAVTIITAEE APSGKPQNIK VEPVNQTTMR 180
181 VTWKPPPRTE WNGEILGYYV GYKLSNTNSS YVFETINFIT EEGKEHNLEL QNLRVYTQYS 240
241 VVIQAFNKIG AGPLSEEEKQ FTAEGTPSQP PSDTACTTLT SQTIRVGWVS PPLESANGVI 300
301 KTYKVVYAPS DEWYDETKRH YKKTASSDTV LHGLKKYTNY TMQVLATTAG GDGVRSVPIH 360
361 CQTEPDVPEA PTDVKALVMG NAAILVSWRP PAQPNGIITQ YTVYSKAEGA ETETKTQKVP 420
421 HYQMSFEATE LEKNKPYEFW VTASTTIGEG QQSKSIVAMP SDQVPAKIAS FDDTFTATFK 480
481 EDAKMPCLAV GAPQPEITWK IKGVEFSAND RMRVLPDGSL LIKSVNRQ
|
| Detection Method: | |
| Confidence: | 29.0 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1376-1592] |
1 11 21 31 41 51
| | | | | |
1 DAGDYSCHAE NSIAKDSITH KLIVLAPPQS PHVTLSATTT DALTVKLKPH EGDTAPLHGY 60
61 TLHYKPEFGE WETSEVSVDS QKHNIEGLLC GSRYQVYATG FNNIGAGEAS DILNTRTKGQ 120
121 KPKLPEKPRF IEVSSNSVSL HFKAWKDGGC PMSHFVVESK KRDQIEWNQI SNNVKPDNNY 180
181 VVLDLEPATW YNLRITAHNS AGFTVAEYDF ATLTVTG
|
| Detection Method: | |
| Confidence: | 24.0 |
| Match: | 1fnhA |
| Description: | Fibronectin, different Fn3 modules |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telethonin binding | 5.81747667416248 | bayes_pls_golite062009 |
| structural constituent of muscle | 5.71979489668015 | bayes_pls_golite062009 |
| transmembrane receptor activity | 4.81256300373074 | bayes_pls_golite062009 |
| ankyrin binding | 4.69755754047169 | bayes_pls_golite062009 |
| receptor activity | 4.66147271961356 | bayes_pls_golite062009 |
| alpha-actinin binding | 4.57951951779666 | bayes_pls_golite062009 |
| actinin binding | 4.57900103206288 | bayes_pls_golite062009 |
| cytokine binding | 4.43581512268554 | bayes_pls_golite062009 |
| cytokine receptor activity | 4.08668869714207 | bayes_pls_golite062009 |
| growth factor binding | 4.06808996928726 | bayes_pls_golite062009 |
| molecular transducer activity | 3.69234048247377 | bayes_pls_golite062009 |
| signal transducer activity | 3.69234048247377 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 3.5949595622742 | bayes_pls_golite062009 |
| protein binding | 3.24522318184038 | bayes_pls_golite062009 |
| binding | 3.12471204223368 | bayes_pls_golite062009 |
| receptor binding | 2.38673889309915 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 2.32179186005318 | bayes_pls_golite062009 |
| peptide hormone binding | 2.12033076929638 | bayes_pls_golite062009 |
| axon guidance receptor activity | 2.01367445237355 | bayes_pls_golite062009 |
| prolactin receptor activity | 1.9556649101819 | bayes_pls_golite062009 |
| mercury ion binding | 1.85843060232985 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.85720106085239 | bayes_pls_golite062009 |
| interleukin-2 binding | 1.67132604890013 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.56410665522466 | bayes_pls_golite062009 |
| myosin light chain kinase activity | 1.49217960276915 | bayes_pls_golite062009 |
| protein kinase activity | 1.42856560840953 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32813363771214 | bayes_pls_golite062009 |
| transcription regulator activity | 1.31663344632755 | bayes_pls_golite062009 |
| ciliary neurotrophic factor receptor activity | 1.27192437373177 | bayes_pls_golite062009 |
| actin binding | 1.21472460452555 | bayes_pls_golite062009 |
| DNA binding | 1.2006039770643 | bayes_pls_golite062009 |
| cytokine activity | 1.18680139050127 | bayes_pls_golite062009 |
| growth hormone receptor activity | 1.15929762138929 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.15899955607967 | bayes_pls_golite062009 |
| heparin binding | 1.15000556789505 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.12142142875217 | bayes_pls_golite062009 |
| kinase activity | 1.11027658115625 | bayes_pls_golite062009 |
| structural molecule activity | 0.94240190391222 | bayes_pls_golite062009 |
| protease binding | 0.942107032692451 | bayes_pls_golite062009 |
| peptide binding | 0.92031154055894 | bayes_pls_golite062009 |
| interleukin-6 binding | 0.888638861691021 | bayes_pls_golite062009 |
| interleukin-6 receptor activity | 0.888638861691021 | bayes_pls_golite062009 |
| protein dimerization activity | 0.86564366658585 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.703490254739121 | bayes_pls_golite062009 |
| kinase binding | 0.65927255037265 | bayes_pls_golite062009 |
| cell surface binding | 0.630081242528945 | bayes_pls_golite062009 |
| oncostatin-M receptor activity | 0.628488391922279 | bayes_pls_golite062009 |
| leukemia inhibitory factor receptor activity | 0.628488391922279 | bayes_pls_golite062009 |
| enzyme binding | 0.60195860585095 | bayes_pls_golite062009 |
| collagen binding | 0.593745877718282 | bayes_pls_golite062009 |
| identical protein binding | 0.564711394496051 | bayes_pls_golite062009 |
| transcription factor activity | 0.557290274937694 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 0.554350228628563 | bayes_pls_golite062009 |
| polysaccharide binding | 0.54737137289904 | bayes_pls_golite062009 |
| hormone binding | 0.49524185948356 | bayes_pls_golite062009 |
| cytokine receptor binding | 0.47107517390107 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 0.46168925186147 | bayes_pls_golite062009 |
| growth factor activity | 0.432629984792427 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.40600177052491 | bayes_pls_golite062009 |
| protein kinase binding | 0.405060010394646 | bayes_pls_golite062009 |
| pattern binding | 0.31156427047296 | bayes_pls_golite062009 |
| interleukin-7 binding | 0.301052531308189 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.1430595594485 | bayes_pls_golite062009 |
| transcription activator activity | 0.135753557343301 | bayes_pls_golite062009 |
| actin filament binding | 0.135484838710405 | bayes_pls_golite062009 |
| protein homodimerization activity | 0.116391819218123 | bayes_pls_golite062009 |
| interleukin-2 receptor activity | 0.115337814289139 | bayes_pls_golite062009 |
| integrin binding | 0.0873424694168858 | bayes_pls_golite062009 |
| transcription factor binding | 0.075900818564989 | bayes_pls_golite062009 |
| interleukin-11 receptor activity | 0.0423783987133706 | bayes_pls_golite062009 |
| interleukin-11 binding | 0.0423783987133706 | bayes_pls_golite062009 |
|
Region A: Residues: [1593-1805] |
1 11 21 31 41 51
| | | | | |
1 GTIAPSRDLP ELSAEDTIRI ILSNLNLVVP VVAALLVIII AIIVICILRS KGNHHKDDVV 60
61 YNQTMGPGAT LDKRRPDLRD ELGYIAPPNR KLPPVPGSNY NTCDRIKRGR GGLRSNHSTW 120
121 DPRRNPNLYE ELKAPPVPMH GNHYGHAHGN AECHYRHPGM EDEICPYATF HLLGFREEMD 180
181 PTKAMNFQTF PHQNGHAGPV PGHAGTMLPP GHP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1806-2016] |
1 11 21 31 41 51
| | | | | |
1 GHVHSRSGSQ SMPRANRYQR KNSQGGQSSI YTPAPEYDDP ANCAEEDQYR RYTRVNSQGG 60
61 SLYSGPGPEY DDPANCAPEE DQYGSQYGGP YGQPYDHYGS RGSMGRRSIG SARNPGNGSP 120
121 EPPPPPPRNH DMSNSSFNDS KESNEISEAE CDRDHGPRGN YGAVKRSPQP KDQRTTEEMR 180
181 KLIERNETGP KQLQLQQANG AGFTAYDTMA V
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
