| Protein: | Dscam-PAC |
| Organism: | Drosophila melanogaster |
| Length: | 2031 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAC.
| Description | E-value | Query Range |
Subject Range |
|
|
1558.0 | [0..3] | [2031..3] |
|
Region A: Residues: [1-253] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVNQF YGADILMEYV IRGNAAVLKC SIPSFVADFV RVESWIDEEG 180
181 TELRPSENYD GKYLVLPSGE LHIREVGPED GYKSYQCRTK HRLTGETRLS ATKGRLVITE 240
241 PVGSVAPKVD MHD
|
| Detection Method: |  |
| Confidence: | 80.69897 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [254-895] |
1 11 21 31 41 51
| | | | | |
1 KMDFTIRSSN RSLNLFCKAQ GFPMPAFRWY KFIEGTTRKQ AVVLNDRVKQ VSGTLIIKDA 60
61 VVEDSGKYLC VVNNSVGGES VETVLTVTAP LSAKIDPPTQ TVDFGRPAVF TCQYTGNPIK 120
121 TVSWMKDGKA IGHSEPVLRI ESVKKEDKGM YQCFVRNDQE SAEASAELKL GGRFDPPVIR 180
181 QAFQEETMEP GPSVFLKCVA GGNPTPEISW ELDGKKIANN DRYQVGQYVT VNGDVVSYLN 240
241 ITSVHANDGG LYKCIAKSKV GVAEHSAKLN VYGLPYIRQM EKKAIVAGET LIVTCPVAGY 300
301 PIDSIVWERD NRALPINRKQ KVFPNGTLII ENVERNSDQA TYTCVAKNQE GYSARGSLEV 360
361 QVMAPPKIAP FDFGQSASSF EDSVSVNCLV TSGDLPIDIE WLFGGEPINF ATGIAILRGG 420
421 KRTSLLTIDS VHAGHAGNYT CKAKNQASSS EYSAALIVNV PPRWILEPTD KAFAQGSDAK 480
481 VECKADGFPK PQVTWKKAVG DTPGEYKDLK KSDNIRVEEG TLHVDNIQKT NEGYYLCEAI 540
541 NGIGSGLSAV IMISVQAPPE FTEKLRNQTA RRGEPAVLQC EAKGEKPIGI LWNMNNMRLD 600
601 PKNDNRYTIR EEILSTGVMS SLSIKRTERS DSALFTCVAT NA
|
| Detection Method: | |
| Confidence: | 60.09691 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [896-1371] |
1 11 21 31 41 51
| | | | | |
1 FGSDDASINM IVQEVPEMPY ALKVLDKSGR SVQLSWAQPY DGNSPLDRYI IEFKRSRASW 60
61 SEIDRVIVPG HTTEAQVQKL SPATTYNIRI VAENAIGTSQ SSEAVTIITA EEAPSGKPQN 120
121 IKVEPVNQTT MRVTWKPPPR TEWNGEILGY YVGYKLSNTN SSYVFETINF ITEEGKEHNL 180
181 ELQNLRVYTQ YSVVIQAFNK IGAGPLSEEE KQFTAEGTPS QPPSDTACTT LTSQTIRVGW 240
241 VSPPLESANG VIKTYKVVYA PSDEWYDETK RHYKKTASSD TVLHGLKKYT NYTMQVLATT 300
301 AGGDGVRSVP IHCQTEPDVP EAPTDVKALV MGNAAILVSW RPPAQPNGII TQYTVYSKAE 360
361 GAETETKTQK VPHYQMSFEA TELEKNKPYE FWVTASTTIG EGQQSKSIVA MPSDQVPAKI 420
421 ASFDDTFTAT FKEDAKMPCL AVGAPQPEIT WKIKGVEFSA NDRMRVLPDG SLLIKS
|
| Detection Method: | |
| Confidence: | 30.39794 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1372-1659] |
1 11 21 31 41 51
| | | | | |
1 VNRQDAGDYS CHAENSIAKD SITHKLIVLA PPQSPHVTLS ATTTDALTVK LKPHEGDTAP 60
61 LHGYTLHYKP EFGEWETSEV SVDSQKHNIE GLLCGSRYQV YATGFNNIGA GEASDILNTR 120
121 TKGQKPKLPE KPRFIEVSSN SVSLHFKAWK DGGCPMSHFV VESKKRDQIE WNQISNNVKP 180
181 DNNYVVLDLE PATWYNLRIT AHNSAGFTVA EYDFATLTVT GGTIAPLDDG SGHGNVHTRI 240
241 RLPAWMPEWL DLNFMVPLIA TVVVVAVGIC VVCVALSRRR ADDMRGGQ
|
| Detection Method: | |
| Confidence: | 22.30103 |
| Match: | 1fnhA |
| Description: | Fibronectin, different Fn3 modules |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telethonin binding | 5.81747667416248 | bayes_pls_golite062009 |
| structural constituent of muscle | 5.71979489668015 | bayes_pls_golite062009 |
| transmembrane receptor activity | 4.81256300373074 | bayes_pls_golite062009 |
| ankyrin binding | 4.69755754047169 | bayes_pls_golite062009 |
| receptor activity | 4.66147271961356 | bayes_pls_golite062009 |
| alpha-actinin binding | 4.57951951779666 | bayes_pls_golite062009 |
| actinin binding | 4.57900103206288 | bayes_pls_golite062009 |
| cytokine binding | 4.43581512268554 | bayes_pls_golite062009 |
| cytokine receptor activity | 4.08668869714207 | bayes_pls_golite062009 |
| growth factor binding | 4.06808996928726 | bayes_pls_golite062009 |
| molecular transducer activity | 3.69234048247377 | bayes_pls_golite062009 |
| signal transducer activity | 3.69234048247377 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 3.5949595622742 | bayes_pls_golite062009 |
| protein binding | 3.24522318184038 | bayes_pls_golite062009 |
| binding | 3.12471204223368 | bayes_pls_golite062009 |
| receptor binding | 2.38673889309915 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 2.32179186005318 | bayes_pls_golite062009 |
| peptide hormone binding | 2.12033076929638 | bayes_pls_golite062009 |
| axon guidance receptor activity | 2.01367445237355 | bayes_pls_golite062009 |
| prolactin receptor activity | 1.9556649101819 | bayes_pls_golite062009 |
| mercury ion binding | 1.85843060232985 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.85720106085239 | bayes_pls_golite062009 |
| interleukin-2 binding | 1.67132604890013 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.56410665522466 | bayes_pls_golite062009 |
| myosin light chain kinase activity | 1.49217960276915 | bayes_pls_golite062009 |
| protein kinase activity | 1.42856560840953 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32813363771214 | bayes_pls_golite062009 |
| transcription regulator activity | 1.31663344632755 | bayes_pls_golite062009 |
| ciliary neurotrophic factor receptor activity | 1.27192437373177 | bayes_pls_golite062009 |
| actin binding | 1.21472460452555 | bayes_pls_golite062009 |
| DNA binding | 1.2006039770643 | bayes_pls_golite062009 |
| growth hormone receptor activity | 1.15929762138929 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.15899955607967 | bayes_pls_golite062009 |
| heparin binding | 1.15000556789505 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.12142142875217 | bayes_pls_golite062009 |
| kinase activity | 1.11027658115625 | bayes_pls_golite062009 |
| cytokine activity | 1.09433218752101 | bayes_pls_golite062009 |
| structural molecule activity | 0.94240190391222 | bayes_pls_golite062009 |
| peptide binding | 0.92031154055894 | bayes_pls_golite062009 |
| interleukin-6 binding | 0.888638861691021 | bayes_pls_golite062009 |
| interleukin-6 receptor activity | 0.888638861691021 | bayes_pls_golite062009 |
| protein dimerization activity | 0.86564366658585 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.703490254739121 | bayes_pls_golite062009 |
| kinase binding | 0.65927255037265 | bayes_pls_golite062009 |
| leukemia inhibitory factor receptor activity | 0.628488391922279 | bayes_pls_golite062009 |
| oncostatin-M receptor activity | 0.628488391922279 | bayes_pls_golite062009 |
| enzyme binding | 0.60195860585095 | bayes_pls_golite062009 |
| collagen binding | 0.593745877718282 | bayes_pls_golite062009 |
| identical protein binding | 0.564711394496051 | bayes_pls_golite062009 |
| transcription factor activity | 0.557290274937694 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 0.554350228628563 | bayes_pls_golite062009 |
| polysaccharide binding | 0.54737137289904 | bayes_pls_golite062009 |
| hormone binding | 0.49524185948356 | bayes_pls_golite062009 |
| cytokine receptor binding | 0.47107517390107 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 0.46168925186147 | bayes_pls_golite062009 |
| pattern binding | 0.44460010885883 | bayes_pls_golite062009 |
| growth factor activity | 0.432629984792427 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.40600177052491 | bayes_pls_golite062009 |
| protein kinase binding | 0.405060010394646 | bayes_pls_golite062009 |
| cell surface binding | 0.366415248711076 | bayes_pls_golite062009 |
| interleukin-7 binding | 0.301052531308189 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.1430595594485 | bayes_pls_golite062009 |
| transcription activator activity | 0.135753557343301 | bayes_pls_golite062009 |
| actin filament binding | 0.135484838710405 | bayes_pls_golite062009 |
| protease binding | 0.12595904253108 | bayes_pls_golite062009 |
| protein homodimerization activity | 0.116391819218123 | bayes_pls_golite062009 |
| interleukin-2 receptor activity | 0.115337814289139 | bayes_pls_golite062009 |
| integrin binding | 0.0873424694168858 | bayes_pls_golite062009 |
| transcription factor binding | 0.075900818564989 | bayes_pls_golite062009 |
| interleukin-11 receptor activity | 0.0423783987133706 | bayes_pls_golite062009 |
| interleukin-11 binding | 0.0423783987133706 | bayes_pls_golite062009 |
|
Region A: Residues: [1660-1836] |
1 11 21 31 41 51
| | | | | |
1 KDVYYDVVYN QTMGPGATLD KRRPDLRDEL GYIAPPNRKL PPVPGSNYNT CDRIKRGRGG 60
61 LRSNHSTWDP RRNPNLYEEL KAPPVPMHGN HYGHAHGNAE CHYRHPGMED EICPYATFHL 120
121 LGFREEMDPT KAMNFQTFPH QNGHAGPVPG HAGTMLPPGH PGHVHSRSGS QSMPRAN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1837-1937] |
1 11 21 31 41 51
| | | | | |
1 RYQRKNSQGG QSSIYTPAPE YDDPANCAEE DQYRRYTRVN SQGGSLYSGP GPEYDDPANC 60
61 APEEDQYGSQ YGGPYGQPYD HYGSRGSMGR RSIGSARNPG N
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1938-2031] |
1 11 21 31 41 51
| | | | | |
1 GSPEPPPPPP RNHDMSNSSF NDSKESNEIS EAECDRDHGP RGNYGAVKRS PQPKDQRTTE 60
61 EMRKLIERNE TGPKQLQLQQ ANGAGFTAYD TMAV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
