| Protein: | ATG4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 494 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..494] | [1..494] |
|
|
0.0 | [2..464] | [43..498] |
|
|
0.0 | [60..413] | [17..382] |
|
|
0.0 | [60..413] | [17..379] |
|
|
0.0 | [60..413] | [17..382] |
|
|
0.0 | [60..406] | [144..492] |
|
|
0.0 | [63..406] | [145..498] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MQRWLQLWKM DLVQKVSHGV FEGSSEEPAA LMNHDYIVLG EVYPERDEES GAEQCEQDCR 60
61 YRGEAVSDGF LSSLFGREIS SYTKEFLLDV QSRVNFTYRT RFVPIARAPD GPSPLSLNLL 120
121 VRTNPISTIE DYIANPDCFN TDI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| peptidase activity | 2.8192612691912 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 2.71117522993364 | bayes_pls_golite062009 |
| hydrolase activity | 2.66167923792227 | bayes_pls_golite062009 |
| endopeptidase activity | 2.56654871607946 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 2.55227247835105 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.13397229861051 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| tubulin binding | 1.85112496470487 | bayes_pls_golite062009 |
| microtubule binding | 1.82320858139311 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.48823471197032 | bayes_pls_golite062009 |
| binding | 1.34325419334831 | bayes_pls_golite062009 |
| protein binding | 1.08139200376412 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.954652694395915 | bayes_pls_golite062009 |
| transporter activity | 0.69523261160023 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.467924587720185 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.439003000540428 | bayes_pls_golite062009 |
| structural molecule activity | 0.297752217869698 | bayes_pls_golite062009 |
| nucleic acid binding | 0.289910308044519 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.125654358663332 | bayes_pls_golite062009 |
| transferase activity | 0.0852393573521809 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0241561776323942 | bayes_pls_golite062009 |
|
Region A: Residues: [144-298] |
1 11 21 31 41 51
| | | | | |
1 GWGCMIRTGQ SLLGNALQIL HLGRDFRVNG NESLERESKF VNWFNDTPEA PFSLHNFVSA 60
61 GTELSDKRPG EWFGPAATAR SIQSLIYGFP ECGIDDCIVS VSSGDIYENE VEKVFAENPN 120
121 SRILFLLGVK LGINAVNESY RESICGILSS TQSVG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [299-393] |
1 11 21 31 41 51
| | | | | |
1 IAGGRPSSSL YFFGYQGNEF LHFDPHIPQP AVEDSFVESC HTSKFGKLQL SEMDPSMLIG 60
61 ILIKGEKDWQ QWKLEVAESA IINVLAKRMD DFDVS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [394-494] |
1 11 21 31 41 51
| | | | | |
1 CSMDDVESVS SNSMKKDASN NENLGVLEGD YVDIGAIFPH TTNTEDVDEY DCFQDIHCKK 60
61 QKIVVMGNTH TVNANLTDYE VEGVLVEKET VGIHSPIDEK C
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
