| Protein: | RSC9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 581 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSC9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..581] | [1..581] |
|
|
0.0 | [82..475] | [244..608] |
|
Region A: Residues: [1-54] |
1 11 21 31 41 51
| | | | | |
1 MNSLASNTPL NGTPVSEAPA TSSEPVNMFE TMVANPIKVS RLQSNGVLTG PAAN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.803 | 0.959 | chromatin binding | a.4.1 | Homeodomain-like |
|
Region A: Residues: [55-500] |
1 11 21 31 41 51
| | | | | |
1 TKSIHYSLAN FNVFQSLPKE TARGVDDLTR MEMALLSGIP EEIKWSLKKY LTYSNKAPYM 60
61 ISLRTLPDLL PLFKTFILPL ERIVEGLNKS SICDSKAMDS LQMGLNALLI LRNLAQDTDS 120
121 VQILVKDREI KSFILFILKK FQCVATGDNK WQLYEGNATF FNELTHYTLD LMEAISSYIA 180
181 PAMKDDHYFQ TLVSILNYTK DRYMVISILR SLSRLLVRSK ANEESAADNL DHKTLSLIVS 240
241 FLLLECDSEL IIASLDFLYQ YILPGSQRIT ELFKSKECSL ILEATLPNLL SYNIATPDYH 300
301 LLQKHKIRLI KRLKPPAPKE PPNLSEDLFQ QLFKLNEPLR STAWLRCCFE PVQEAEFTQI 360
361 SLWRSYESKF GQPVRESGRK LLPAVEFIKN VSNAFNNAAA IVITDPVTGK KRFVIKGIQP 420
421 RFKALGIADG ERESQVPISA LKSKFL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [501-581] |
1 11 21 31 41 51
| | | | | |
1 NDSKEITPAR QNSIPEVKFP QELSDVSKVA CTFLCLLSND TDDGAGSAFC QRIRPLVLHK 60
61 LADIPPLTLA LSEYMENTSG L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 5.23858959608048 | bayes_pls_golite062009 |
| DNA binding | 4.78517210147551 | bayes_pls_golite062009 |
| nucleic acid binding | 4.72059012764202 | bayes_pls_golite062009 |
| transcription factor activity | 4.02736190679869 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.41045867230388 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.21432668306508 | bayes_pls_golite062009 |
| transcription activator activity | 2.13702350917359 | bayes_pls_golite062009 |
| transcription repressor activity | 1.9708626903609 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.75305601393584 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.26260991083343 | bayes_pls_golite062009 |
| transcription factor binding | 0.752335897765285 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.490809930581315 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0406721670764369 | bayes_pls_golite062009 |
|
Region A: Residues: [482-581] |
1 11 21 31 41 51
| | | | | |
1 ADGERESQVP ISALKSKFLN DSKEITPARQ NSIPEVKFPQ ELSDVSKVAC TFLCLLSNDT 60
61 DDGAGSAFCQ RIRPLVLHKL ADIPPLTLAL SEYMENTSGL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
