| Protein: | RSC9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 581 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSC9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..581] | [1..581] |
|
|
0.0 | [82..475] | [244..608] |
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Region A: Residues: [1-54] |
1 11 21 31 41 51
| | | | | |
1 MNSLASNTPL NGTPVSEAPA TSSEPVNMFE TMVANPIKVS RLQSNGVLTG PAAN
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| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.803 | 0.959 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.722 | 0.959 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.608 | 0.959 | chromatin binding | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.582 | 0.959 | chromatin binding | g.15.1 | Ovomucoid/PCI-1 like inhibitors |
| View | Download | 0.556 | 0.959 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.514 | 0.959 | chromatin binding | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.496 | 0.959 | chromatin binding | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.454 | 0.959 | chromatin binding | a.4.1 | Homeodomain-like |
| View | Download | 0.449 | 0.959 | chromatin binding | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.443 | 0.959 | chromatin binding | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.422 | 0.959 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.380 | 0.959 | chromatin binding | a.5.2 | UBA-like |
| View | Download | 0.372 | 0.959 | chromatin binding | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.366 | 0.959 | chromatin binding | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.360 | 0.959 | chromatin binding | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.320 | 0.959 | chromatin binding | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.309 | 0.959 | chromatin binding | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.276 | 0.959 | chromatin binding | a.60.2 | RuvA domain 2-like |
| View | Download | 0.263 | 0.959 | chromatin binding | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.226 | 0.959 | chromatin binding | a.65.1 | Annexin |
| View | Download | 0.212 | 0.959 | chromatin binding | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.208 | 0.959 | chromatin binding | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.206 | 0.959 | chromatin binding | a.60.5 | Barrier-to-autointegration factor, BAF |
|
Region A: Residues: [55-500] |
1 11 21 31 41 51
| | | | | |
1 TKSIHYSLAN FNVFQSLPKE TARGVDDLTR MEMALLSGIP EEIKWSLKKY LTYSNKAPYM 60
61 ISLRTLPDLL PLFKTFILPL ERIVEGLNKS SICDSKAMDS LQMGLNALLI LRNLAQDTDS 120
121 VQILVKDREI KSFILFILKK FQCVATGDNK WQLYEGNATF FNELTHYTLD LMEAISSYIA 180
181 PAMKDDHYFQ TLVSILNYTK DRYMVISILR SLSRLLVRSK ANEESAADNL DHKTLSLIVS 240
241 FLLLECDSEL IIASLDFLYQ YILPGSQRIT ELFKSKECSL ILEATLPNLL SYNIATPDYH 300
301 LLQKHKIRLI KRLKPPAPKE PPNLSEDLFQ QLFKLNEPLR STAWLRCCFE PVQEAEFTQI 360
361 SLWRSYESKF GQPVRESGRK LLPAVEFIKN VSNAFNNAAA IVITDPVTGK KRFVIKGIQP 420
421 RFKALGIADG ERESQVPISA LKSKFL
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [501-581] |
1 11 21 31 41 51
| | | | | |
1 NDSKEITPAR QNSIPEVKFP QELSDVSKVA CTFLCLLSND TDDGAGSAFC QRIRPLVLHK 60
61 LADIPPLTLA LSEYMENTSG L
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.374 | a.59.1 | PAH2 domain |
| View | Download | 0.462 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.354 | a.4.12 | TrpR-like |
| View | Download | 0.373 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.375 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.351 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.340 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.334 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
| View | Download | 0.300 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.298 | a.47.2 | t-snare proteins |
| View | Download | 0.293 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.285 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.275 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.269 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.262 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.261 | a.4.3 | ARID-like |
| View | Download | 0.260 | a.118.1 | ARM repeat |
| View | Download | 0.254 | a.2.3 | Chaperone J-domain |
| View | Download | 0.249 | a.4.1 | Homeodomain-like |
| View | Download | 0.240 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.227 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.226 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.224 | d.58.17 | Metal-binding domain |
| View | Download | 0.222 | a.118.1 | ARM repeat |
| View | Download | 0.221 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.221 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.218 | a.4.12 | TrpR-like |
| View | Download | 0.217 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.214 | a.46.1 | Methionine synthase domain |
| View | Download | 0.209 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| Term | Confidence | Notes |
| transcription regulator activity | 5.23858959608048 | bayes_pls_golite062009 |
| DNA binding | 4.78517210147551 | bayes_pls_golite062009 |
| nucleic acid binding | 4.72059012764202 | bayes_pls_golite062009 |
| transcription factor activity | 4.02736190679869 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.41045867230388 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.21432668306508 | bayes_pls_golite062009 |
| transcription activator activity | 2.13702350917359 | bayes_pls_golite062009 |
| transcription repressor activity | 1.9708626903609 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.75305601393584 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.26260991083343 | bayes_pls_golite062009 |
| transcription factor binding | 0.752335897765285 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.490809930581315 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.0406721670764369 | bayes_pls_golite062009 |
|
Region A: Residues: [482-581] |
1 11 21 31 41 51
| | | | | |
1 ADGERESQVP ISALKSKFLN DSKEITPARQ NSIPEVKFPQ ELSDVSKVAC TFLCLLSNDT 60
61 DDGAGSAFCQ RIRPLVLHKL ADIPPLTLAL SEYMENTSGL
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.462 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.354 | a.4.12 | TrpR-like |
| View | Download | 0.373 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.374 | a.59.1 | PAH2 domain |
| View | Download | 0.375 | a.118.11 | Cytochrome c oxidase subunit E |
