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Protein Overview: rsc9

General Information:
Name(s) found: rsc9 / SPBC1703.02 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • RSC complex subunit Rsc9 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 780 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    RSC complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ISSLink to PubMed article]
    transcription of nuclear rRNA large RNA polymerase I transcript [NASLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [ICLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVIQGAVE EPVYSNKSLT NENDSFLSLI ESFSQERGVP IDINPKIGRK PILLYELYKK  60
   61 VIKRGGYDAV SATEDGWTNI AEEFNQSDPA RSAGILQNVY FKYLISWEIH DHWHLLLPPP 120
  121 STLELSENRQ NVLERVKVFN SCSPPKPTNP ITIIDNDKTH SFKKFYKSLV KEDEENGIEK 180
  181 KINEAMNSSA SQPLPNSTNF ASTTFPSVPF HPLPVDSGLQ KYIDRNSNLT PPALGAGVPG 240
  241 PPLLVRVALA LKSQQDKEVD WAIGHLIKIS FERHQEFKLE RLPSLAECLV YSLGFQVTKA 300
  301 KQVSDLTDIS LCMDRAIGIA LVLRNSVLSV ENAKHVAQTK LVISVLEASI RCAKTFNNLE 360
  361 FLHYCLDISE MISSYLHVED EKNVFYLALC EFLNSSDYSI LIATLRTLAR LALNDRNNRL 420
  421 LQDLKSNVIA NIIALVETDN EEIVAAALDF LYQYTTYRTN TSNLLASQEA WMLVDQLIRL 480
  481 MMYQAQERFM TVTIENSESN PAVKHEATSS ISLPMEELQQ LVAMREPERS VKWMRCCFEP 540
  541 SSDDYVLQTD IWQLYCSDME RAQGPNVMGI SPADFIKVSS HAFYNARAMT VSTPQLPVEY 600
  601 VINGIKRRKF PTSVNGMRYQ PCRWCLDSGK ECGELLLGTP LLHSHLQEMH IFPQILETGK 660
  661 CRWSDCKYEI QRLTPASELS HYQLLSHIVT HLHDDSLETL VEGRKLSPSR EFRIPLLLTA 720
  721 VDDQGDATGI ALTATLVLRN LVRSKQGKML FSAIESRVLE VSSLNPAVAP YVSEMLLGQI 780
  781

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 32.30103 DNA-binding domain from the dead ringer protein
    2 View Details [137..236] deduced N/A No confident structure predictions are available.
    3 View Details [237..522] FFAS03 1.28 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP
    4 View Details [523..780] PSI-BLAST 39.69897 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.55411292098115 bayes_pls_golite062009
  • DNA binding
    		•  4.18200206364084 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.89826332285646 bayes_pls_golite062009
  • binding
    		•  3.49534193682441 bayes_pls_golite062009
  • transcription factor activity
    		•  2.3812627628982 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.32480271621458 bayes_pls_golite062009
  • transcription activator activity
    		•  2.19377524406907 bayes_pls_golite062009
  • transcription coactivator activity
    		•  2.08578967307608 bayes_pls_golite062009
  • transcription factor binding
    		•  1.28734696305262 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.17489559520071 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.13378621684772 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.06026105710513 bayes_pls_golite062009
  • protein binding
    		•  0.923807406971133 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle