| Protein: | rsc9 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 780 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsc9.
| Description | E-value | Query Range |
Subject Range |
|
|
545.0 | [0..6] | [776..37] |
|
|
515.0 | [0..5] | [693..1] |
|
|
512.0 | [0..5] | [776..1] |
|
|
457.0 | [0..18] | [693..13] |
|
|
418.0 | [0..133] | [777..26] |
|
|
405.0 | [0..16] | [621..9] |
|
|
385.0 | [0..133] | [777..26] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MSQVIQGAVE EPVYSNKSLT NENDSFLSLI ESFSQERGVP IDINPKIGRK PILLYELYKK 60
61 VIKRGGYDAV SATEDGWTNI AEEFNQSDPA RSAGILQNVY FKYLISWEIH DHWHLLLPPP 120
121 STLELSENRQ NVLERV
|
| Detection Method: |  |
| Confidence: | 32.30103 |
| Match: | 1kqqA |
| Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.55411292098115 | bayes_pls_golite062009 |
| DNA binding | 4.18200206364084 | bayes_pls_golite062009 |
| nucleic acid binding | 3.89826332285646 | bayes_pls_golite062009 |
| binding | 3.49534193682441 | bayes_pls_golite062009 |
| transcription factor activity | 2.3812627628982 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.32480271621458 | bayes_pls_golite062009 |
| transcription activator activity | 2.19377524406907 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.08578967307608 | bayes_pls_golite062009 |
| transcription factor binding | 1.28734696305262 | bayes_pls_golite062009 |
| transcription repressor activity | 1.17489559520071 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.13378621684772 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06026105710513 | bayes_pls_golite062009 |
| protein binding | 0.923807406971133 | bayes_pls_golite062009 |
|
Region A: Residues: [137-236] |
1 11 21 31 41 51
| | | | | |
1 KVFNSCSPPK PTNPITIIDN DKTHSFKKFY KSLVKEDEEN GIEKKINEAM NSSASQPLPN 60
61 STNFASTTFP SVPFHPLPVD SGLQKYIDRN SNLTPPALGA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [237-522] |
1 11 21 31 41 51
| | | | | |
1 GVPGPPLLVR VALALKSQQD KEVDWAIGHL IKISFERHQE FKLERLPSLA ECLVYSLGFQ 60
61 VTKAKQVSDL TDISLCMDRA IGIALVLRNS VLSVENAKHV AQTKLVISVL EASIRCAKTF 120
121 NNLEFLHYCL DISEMISSYL HVEDEKNVFY LALCEFLNSS DYSILIATLR TLARLALNDR 180
181 NNRLLQDLKS NVIANIIALV ETDNEEIVAA ALDFLYQYTT YRTNTSNLLA SQEAWMLVDQ 240
241 LIRLMMYQAQ ERFMTVTIEN SESNPAVKHE ATSSISLPME ELQQLV
|
| Detection Method: | |
| Confidence: | 1.28 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [523-780] |
1 11 21 31 41 51
| | | | | |
1 AMREPERSVK WMRCCFEPSS DDYVLQTDIW QLYCSDMERA QGPNVMGISP ADFIKVSSHA 60
61 FYNARAMTVS TPQLPVEYVI NGIKRRKFPT SVNGMRYQPC RWCLDSGKEC GELLLGTPLL 120
121 HSHLQEMHIF PQILETGKCR WSDCKYEIQR LTPASELSHY QLLSHIVTHL HDDSLETLVE 180
181 GRKLSPSREF RIPLLLTAVD DQGDATGIAL TATLVLRNLV RSKQGKMLFS AIESRVLEVS 240
241 SLNPAVAPYV SEMLLGQI
|
| Detection Method: | |
| Confidence: | 39.69897 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
