| Protein: | PRP19 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 503 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP19.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [66..500] | [850..1255] |
|
|
0.0 | [107..500] | [1124..1488] |
|
|
2.0E-99 | [1..493] | [3..504] |
|
|
4.0E-99 | [1..493] | [3..504] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MLCAISGKVP RRPVLSPKSR TIFEKSLLEQ YVKDTGNDPI TNEPLSIEEI VEIVPSAQQA 60
61 SLTESTNSAT LKANYSIPNL LTSLQNEWDA IMLENFKLRS TLDSLTKKLS TVMYERDAAK 120
121 LVAA
|
| Detection Method: |  |
| Confidence: | 2.69897 |
| Match: | 1bf5A_ |
| Description: | STAT-1, coiled coil domain; STAT-1, DNA-binding domain; STAT-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 4.77196423114965 | bayes_pls_golite062009 | |
| ubiquitin-protein ligase activity | 3.95853381924066 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 3.91255887330293 | bayes_pls_golite062009 |
| RNA binding | 3.04658201081989 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.94837447933806 | bayes_pls_golite062009 |
| binding | 2.78710909602478 | bayes_pls_golite062009 |
| transcription regulator activity | 2.32056863527247 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91926431269551 | bayes_pls_golite062009 |
| DNA binding | 1.67694054164995 | bayes_pls_golite062009 |
| protein binding | 1.5975811408548 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 1.43156142066182 | bayes_pls_golite062009 |
| ligase activity | 1.36029325773279 | bayes_pls_golite062009 |
| transcription factor binding | 1.04179360284548 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.97326424822508 | bayes_pls_golite062009 |
| transcription factor activity | 0.942440775656356 | bayes_pls_golite062009 |
| hydrolase activity | 0.39313698408945 | bayes_pls_golite062009 |
| transcription repressor activity | 0.251823232412941 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.120138679619734 | bayes_pls_golite062009 |
|
Region A: Residues: [125-503] |
1 11 21 31 41 51
| | | | | |
1 QLLMEKNEDS KDLPKSSQQA VAITREEFLQ GLLQSSRDFV ARGKLKAPKW PILKNLELLQ 60
61 AQNYSRNIKT FPYKELNKSM YYDKWVCMCR CEDGALHFTQ LKDSKTITTI TTPNPRTGGE 120
121 HPAIISRGPC NRLLLLYPGN QITILDSKTN KVLREIEVDS ANEIIYMYGH NEVNTEYFIW 180
181 ADNRGTIGFQ SYEDDSQYIV HSAKSDVEYS SGVLHKDSLL LALYSPDGIL DVYNLSSPDQ 240
241 ASSRFPVDEE AKIKEVKFAD NGYWMVVECD QTVVCFDLRK DVGTLAYPTY TIPEFKTGTV 300
301 TYDIDDSGKN MIAYSNESNS LTIYKFDKKT KNWTKDEESA LCLQSDTADF TDMDVVCGDG 360
361 GIAAILKTND SFNIVALTP
|
| Detection Method: | |
| Confidence: | 77.39794 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
