| Protein: | SSL2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 843 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSL2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..843] | [1..843] |
|
|
0.0 | [52..835] | [2..779] |
|
|
0.0 | [65..835] | [2..795] |
|
|
0.0 | [52..835] | [2..780] |
|
|
0.0 | [65..835] | [2..799] |
|
|
0.0 | [28..840] | [11..802] |
|
Region A: Residues: [1-297] |
1 11 21 31 41 51
| | | | | |
1 MTDVEGYQPK SKGKIFPDMG ESFFSSDEDS PATDAEIDEN YDDNRETSEG RGERDTGAMV 60
61 TGLKKPRKKT KSSRHTAADS SMNQMDAKDK ALLQDTNSDI PADFVPDSVS GMFRSHDFSY 120
121 LRLRPDHASR PLWISPSDGR IILESFSPLA EQAQDFLVTI AEPISRPSHI HEYKITAYSL 180
181 YAAVSVGLET DDIISVLDRL SKVPVAESII NFIKGATISY GKVKLVIKHN RYFVETTQAD 240
241 ILQMLLNDSV IGPLRIDSDH QVQPPEDVLQ QQLQQTAGKP ATNVNPNDVE AVFSAVI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [298-570] |
1 11 21 31 41 51
| | | | | |
1 GGDNEREEED DDIDAVHSFE IANESVEVVK KRCQEIDYPV LEEYDFRNDH RNPDLDIDLK 60
61 PSTQIRPYQE KSLSKMFGNG RARSGIIVLP CGAGKTLVGI TAACTIKKSV IVLCTSSVSV 120
121 MQWRQQFLQW CTLQPENCAV FTSDNKEMFQ TESGLVVSTY SMVANTRNRS HDSQKVMDFL 180
181 TGREWGFIIL DEVHVVPAAM FRRVVSTIAA HAKLGLTATL VREDDKIGDL NFLIGPKLYE 240
241 ANWMELSQKG HIANVQCAEV WCPMTAEFYQ EYL
|
| Detection Method: | |
| Confidence: | 94.39794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [571-717] |
1 11 21 31 41 51
| | | | | |
1 RETARKRMLL YIMNPTKFQA CQFLIQYHER RGDKIIVFSD NVYALQEYAL KMGKPFIYGS 60
61 TPQQERMNIL QNFQYNDQIN TIFLSKVGDT SIDLPEATCL IQISSHYGSR RQEAQRLGRI 120
121 LRAKRRNDEG FNAFFYSLVS KDTQEMY
|
| Detection Method: | |
| Confidence: | 94.39794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.67074370996647 | bayes_pls_golite062009 |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| transcription activator activity | 3.70589483230587 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.58179858678904 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.7405324052133 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.82365519759474 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.82365519759474 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.81270943531115 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.38449475025903 | bayes_pls_golite062009 |
| RNA binding | 0.992043085614693 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| transferase activity | 0.382878181629158 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.349632742873003 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.237727660028553 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.23177057841536 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 0.13524243942225 | bayes_pls_golite062009 |
|
Region A: Residues: [718-843] |
1 11 21 31 41 51
| | | | | |
1 YSTKRQAFLV DQGYAFKVIT HLHGMENIPN LAYASPRERR ELLQEVLLKN EEAAGIEVGD 60
61 DADNSVGRGS NGHKRFKSKA VRGEGSLSGL AGGEDMAYME YSTNKNKELK EHHPLIRKMY 120
121 YKNLKK
|
| Detection Method: | |
| Confidence: | 10.30103 |
| Match: | 1d2mA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
