| Protein: | SET1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1080 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SET1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1080] | [1..1080] |
|
|
0.0 | [200..1080] | [47..920] |
|
|
1.0E-72 | [272..1079] | [752..1520] |
|
|
3.0E-72 | [272..1079] | [679..1447] |
|
|
2.0E-71 | [523..1060] | [188..733] |
|
|
5.0E-70 | [524..1060] | [188..733] |
|
Region A: Residues: [1-286] |
1 11 21 31 41 51
| | | | | |
1 MSNYYRRAHA SSGSYRQPQE QPQYSRSGHY QYSNGHSHQQ YSSQYNQRRR YNHNDGTRRR 60
61 YNDDRPHSSN NASTRQYYAT NNSQSGPYVN KKSDISSRRG MSQSRYSNSN VHNTLASSSG 120
121 SLPTESALLL QQRPPSVLRY NTDNLKSKFH YFDPIKGEFF NKDKMLSWKA TDKEFSETGY 180
181 YVVKELQDGQ FKFKIKHRHP EIKASDPRNE NGIMTSGKVA THRKCRNSLI LLPRISYDRY 240
241 SLGPPPSCEI VVYPAQDSTT TNIQDISIKN YFKKYGEISH FEAFND
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [287-807] |
1 11 21 31 41 51
| | | | | |
1 PNSALPLHVY LIKYASSDGK INDAAKAAFS AVRKHESSGC FIMGFKFEVI LNKHSILNNI 60
61 ISKFVEINVK KLQKLQENLK KAKEKEAENE KAKELQGKDI TLPKEPKVDT LSHSSGSEKR 120
121 IPYDLLGVVN NRPVLHVSKI FVAKHRFCVE DFKYKLRGYR CAKFIDHPTG IYIIFNDIAH 180
181 AQTCSNAESG NLTIMSRSRR IPILIKFHLI LPRFQNRTRF NKSSSSSNST NVPIKYESKE 240
241 EFIEATAKQI LKDLEKTLHV DIKKRLIGPT VFDALDHANF PELLAKRELK EKEKRQQIAS 300
301 KIAEDELKRK EEAKRDFDLF GLYGGYAKSN KRNLKRHNSL ALDHTSLKRK KLSNGIKPMA 360
361 HLLNEETDSK ETTPLNDEGI TRVSKEHDEE DENMTSSSSE EEEEEAPDKK FKSESEPTTP 420
421 ESDHLHGIKP LVPDQNGSSD VLDASSMYKP TATEIPEPVY PPEEYDLKYS QTLSSMDLQN 480
481 AIKDEEDMLI LKQLLSTYTP TVTPETSAAL EYKIWQSRRK V
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [808-901] |
1 11 21 31 41 51
| | | | | |
1 LEEEKASDWQ IELNGTLFDS ELQPGSSFKA EGFRKIADKL KINYLPHRRR VHQPLNTVNI 60
61 HNERNEYTPE LCQREESSNK EPSDSVPQEV SSSR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| nucleic acid binding | 4.65259034341669 | bayes_pls_golite062009 |
| binding | 3.48033873254013 | bayes_pls_golite062009 |
| RNA binding | 2.51560202858525 | bayes_pls_golite062009 |
| telomeric DNA binding | 2.47873883381637 | bayes_pls_golite062009 |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| DNA binding | 1.99030664201171 | bayes_pls_golite062009 |
| mRNA binding | 1.52376515340629 | bayes_pls_golite062009 |
| transcription repressor activity | 1.26023364760328 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.19033433766236 | bayes_pls_golite062009 |
| transcription factor activity | 1.09958329302628 | bayes_pls_golite062009 |
| protein binding | 1.05805521997665 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.866729044067453 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.715114913338408 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.633093884585572 | bayes_pls_golite062009 |
| 0.612296958107081 | bayes_pls_golite062009 | |
| sequence-specific DNA binding | 0.327072171076297 | bayes_pls_golite062009 |
|
Region A: Residues: [902-1080] |
1 11 21 31 41 51
| | | | | |
1 DNRASNRRFQ QDIEAQKAAI GTESELLSLN QLNKRKKPVM FARSAIHNWG LYALDSIAAK 60
61 EMIIEYVGER IRQPVAEMRE KRYLKNGIGS SYLFRVDENT VIDATKKGGI ARFINHCCDP 120
121 NCTAKIIKVG GRRRIVIYAL RDIAASEELT YDYKFEREKD DEERLPCLCG APNCKGFLN
|
| Detection Method: | |
| Confidence: | 62.69897 |
| Match: | PF00856 |
| Description: | SET domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [734-809] |
1 11 21 31 41 51
| | | | | |
1 YKPTATEIPE PVYPPEEYDL KYSQTLSSMD LQNAIKDEED MLILKQLLST YTPTVTPETS 60
61 AALEYKIWQS RRKVLE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [810-1080] |
1 11 21 31 41 51
| | | | | |
1 EEKASDWQIE LNGTLFDSEL QPGSSFKAEG FRKIADKLKI NYLPHRRRVH QPLNTVNIHN 60
61 ERNEYTPELC QREESSNKEP SDSVPQEVSS SRDNRASNRR FQQDIEAQKA AIGTESELLS 120
121 LNQLNKRKKP VMFARSAIHN WGLYALDSIA AKEMIIEYVG ERIRQPVAEM REKRYLKNGI 180
181 GSSYLFRVDE NTVIDATKKG GIARFINHCC DPNCTAKIIK VGGRRRIVIY ALRDIAASEE 240
241 LTYDYKFERE KDDEERLPCL CGAPNCKGFL N
|
| Detection Method: | |
| Confidence: | 61.69897 |
| Match: | 2r3aA |
| Description: | No description for 2r3aA was found. |
