| Protein: | MIG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 504 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIG1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..382] | [386..749] |
|
|
0.0 | [2..382] | [391..754] |
|
|
0.0 | [2..386] | [453..848] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MQSPYPMTQV SNVDDGSLLK ESKSKSKVAA KSEAPRPHAC PICHRAFHRL EHQTRHMRIH 60
61 TGEKPHACDF PGCVKRFSRS DELTRHRRI
|
| Detection Method: |  |
| Confidence: | 134.70927 |
| Match: | 1lu6A_ |
| Description: | No description for 1lu6A_ was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.47951889934838 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35187767955595 | bayes_pls_golite062009 |
| DNA binding | 4.31051339571017 | bayes_pls_golite062009 |
| transcription factor activity | 3.28758716579796 | bayes_pls_golite062009 |
| transcription repressor activity | 3.07956158665183 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.96255357208943 | bayes_pls_golite062009 |
| transcription activator activity | 1.97757778483124 | bayes_pls_golite062009 |
| chromatin binding | 1.91511881662436 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.35857850481346 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.26862497534835 | bayes_pls_golite062009 |
| transcription factor binding | 1.23738346570539 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.16887811832337 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.16875264917476 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.885270755906501 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.627794176881836 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
|
Region A: Residues: [90-193] |
1 11 21 31 41 51
| | | | | |
1 HTNSHPRGKR GRKKKVVGSP INSASSSATS IPDLNTANFS PPLPQQHLSP LIPIAIAPKE 60
61 NSSRSSTRKG RKTKFEIGES GGNDPYMVSS PKTMAKIPVS VKPP
|
| Detection Method: | |
| Confidence: | 134.70927 |
| Match: | 1lu6A_ |
| Description: | No description for 1lu6A_ was found. |
|
Region A: Residues: [194-254] |
1 11 21 31 41 51
| | | | | |
1 PSLALNNMNY QTSSASTALS SLSNSHSGSR LKLNALSSLQ MMTPIASSAP RTVFIDGPEQ 60
61 K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.854 | 0.146 | specific RNA polymerase II transcription factor activity | d.58.17 | Metal-binding domain |
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.32402779550955 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.06887513322119 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [255-433] |
1 11 21 31 41 51
| | | | | |
1 QLQQQQNSLS PRYSNTVILP RPRSLTDFQG LNNANPNNNG SLRAQTQSSV QLKRPSSVLS 60
61 LNDLLVGQRN TNESDSDFTT GGEDEEDGLK DPSNSSIDNL EQDYLQEQSR KKSKTSTPTT 120
121 MLSRSTSGTN LHTLGYVMNQ NHLHFSSSSP DFQKELNNRL LNVQQQQQEQ HTLLQSQNT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [434-504] |
1 11 21 31 41 51
| | | | | |
1 SNQSQNQNQN QMMASSSSLS TTPLLLSPRV NMINTAISTQ QTPISQSDSQ VQELETLPPI 60
61 RSLPLPFPHM D
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.248 | 0.933 | specific RNA polymerase II transcription factor activity | a.4.5 | "Winged helix" DNA-binding domain |
