| Protein: | MIG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 504 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIG1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..382] | [386..749] |
|
|
0.0 | [2..382] | [391..754] |
|
|
0.0 | [2..386] | [453..848] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MQSPYPMTQV SNVDDGSLLK ESKSKSKVAA KSEAPRPHAC PICHRAFHRL EHQTRHMRIH 60
61 TGEKPHACDF PGCVKRFSRS DELTRHRRI
|
| Detection Method: |  |
| Confidence: | 134.70927 |
| Match: | 1lu6A_ |
| Description: | No description for 1lu6A_ was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.47951889934838 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35187767955595 | bayes_pls_golite062009 |
| DNA binding | 4.31051339571017 | bayes_pls_golite062009 |
| transcription factor activity | 3.28758716579796 | bayes_pls_golite062009 |
| transcription repressor activity | 3.07956158665183 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.96255357208943 | bayes_pls_golite062009 |
| transcription activator activity | 1.97757778483124 | bayes_pls_golite062009 |
| chromatin binding | 1.91511881662436 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.35857850481346 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.26862497534835 | bayes_pls_golite062009 |
| transcription factor binding | 1.23738346570539 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.16887811832337 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.16875264917476 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.885270755906501 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.627794176881836 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
|
Region A: Residues: [90-193] |
1 11 21 31 41 51
| | | | | |
1 HTNSHPRGKR GRKKKVVGSP INSASSSATS IPDLNTANFS PPLPQQHLSP LIPIAIAPKE 60
61 NSSRSSTRKG RKTKFEIGES GGNDPYMVSS PKTMAKIPVS VKPP
|
| Detection Method: | |
| Confidence: | 134.70927 |
| Match: | 1lu6A_ |
| Description: | No description for 1lu6A_ was found. |
|
Region A: Residues: [194-254] |
1 11 21 31 41 51
| | | | | |
1 PSLALNNMNY QTSSASTALS SLSNSHSGSR LKLNALSSLQ MMTPIASSAP RTVFIDGPEQ 60
61 K
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.854 | 0.146 | specific RNA polymerase II transcription factor activity | d.58.17 | Metal-binding domain |
| View | Download | 0.595 | 0.041 | specific RNA polymerase II transcription factor activity | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.555 | 0.006 | specific RNA polymerase II transcription factor activity | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.533 | N/A | N/A | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.515 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.508 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.506 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.450 | N/A | N/A | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.447 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.443 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.399 | N/A | N/A | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.375 | N/A | N/A | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.375 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.369 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.364 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.353 | N/A | N/A | a.159.2 | FF domain |
| View | Download | 0.353 | N/A | N/A | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.342 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.332 | N/A | N/A | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.316 | N/A | N/A | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.306 | N/A | N/A | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.298 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.298 | N/A | N/A | g.3.7 | Scorpion toxin-like |
| View | Download | 0.298 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.294 | N/A | N/A | d.40.1 | CI-2 family of serine protease inhibitors |
| View | Download | 0.293 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.292 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.284 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.284 | N/A | N/A | d.64.1 | eIF1-like |
| View | Download | 0.282 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.270 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.263 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.259 | N/A | N/A | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.252 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.252 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.252 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.248 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.233 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.231 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.223 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.209 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.207 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.200 | N/A | N/A | a.4.1 | Homeodomain-like |
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.32402779550955 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.06887513322119 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [255-433] |
1 11 21 31 41 51
| | | | | |
1 QLQQQQNSLS PRYSNTVILP RPRSLTDFQG LNNANPNNNG SLRAQTQSSV QLKRPSSVLS 60
61 LNDLLVGQRN TNESDSDFTT GGEDEEDGLK DPSNSSIDNL EQDYLQEQSR KKSKTSTPTT 120
121 MLSRSTSGTN LHTLGYVMNQ NHLHFSSSSP DFQKELNNRL LNVQQQQQEQ HTLLQSQNT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [434-504] |
1 11 21 31 41 51
| | | | | |
1 SNQSQNQNQN QMMASSSSLS TTPLLLSPRV NMINTAISTQ QTPISQSDSQ VQELETLPPI 60
61 RSLPLPFPHM D
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.248 | 0.933 | specific RNA polymerase II transcription factor activity | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.444 | 0.933 | specific RNA polymerase II transcription factor activity | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.243 | 0.933 | specific RNA polymerase II transcription factor activity | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.224 | 0.933 | specific RNA polymerase II transcription factor activity | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.221 | 0.933 | specific RNA polymerase II transcription factor activity | a.64.1 | Saposin |
| View | Download | 0.219 | 0.933 | specific RNA polymerase II transcription factor activity | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.212 | 0.933 | specific RNA polymerase II transcription factor activity | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.206 | 0.933 | specific RNA polymerase II transcription factor activity | a.7.7 | BAG domain |
