| Protein: | CYM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 989 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYM1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..989] | [1..989] |
|
|
0.0 | [3..987] | [24..1037] |
|
|
0.0 | [2..977] | [71..1063] |
|
|
0.0 | [21..972] | [2..953] |
|
|
0.0 | [21..972] | [2..953] |
|
|
0.0 | [14..966] | [23..949] |
|
|
0.0 | [8..966] | [18..949] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MLRFQRFASS YAQAQAVRKY PVGGIFHGYE VRRILPVPEL RLTAVDLVHS QTGAEHLHID 60
61 RDDKNNVFSI AFKTNPPDST GVPHILEHTT LCGSVKYPVR DPFFKMLNKS LANFMNAMTG 120
121 PDYTFFPFST TNPQDFANLR GVYLDSTLNP LLKQEDFDQE GWRLEHKNIT DPESNIVFKG 180
181 VVYNEMKGQI
|
|
Region B: Residues: [209-277] |
1 11 21 31 41 51
| | | | | |
1 LNNSGGDPMK ITDLRYGDLL DFHHKNYHPS NAKTFTYGNL PLVDTLKQLN EQFSGYGKRA 60
61 RKDKLLMPI
|
|
Region C: Residues: [413-447] |
1 11 21 31 41 51
| | | | | |
1 DQKADFGLQL LYSILPGWTN KIDPFESLLF EDVLQ
|
| Detection Method: |  |
| Confidence: | 91.69897 |
| Match: | 1bccA_ |
| Description: | Cytochrome bc1 core subunit 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| metalloendopeptidase activity | 3.72038852665442 | bayes_pls_golite062009 |
| endopeptidase activity | 3.60100837479757 | bayes_pls_golite062009 |
| peptidase activity | 3.59435865021473 | bayes_pls_golite062009 |
| metallopeptidase activity | 3.51928093329287 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.00607833553933 | bayes_pls_golite062009 |
| hydrolase activity | 2.42559068821325 | bayes_pls_golite062009 |
| catalytic activity | 1.30647052031202 | bayes_pls_golite062009 |
| binding | 0.820758410659358 | bayes_pls_golite062009 |
|
Region A: Residues: [191-208] |
1 11 21 31 41 51
| | | | | |
1 SNANYYFWSK FQQSIYPS
|
|
Region B: Residues: [278-412] |
1 11 21 31 41 51
| | | | | |
1 DLKKDIDVKL LGQIDTMLPP EKQTKASMTW ICGAPQDTYD TFLLKVLGNL LMDGHSSVMY 60
61 QKLIESGIGL EFSVNSGVEP TTAVNLLTVG IQGVSDIEIF KDTVNNIFQN LLETEHPFDR 120
121 KRIDAIIEQL ELSKK
|
|
Region C: Residues: [448-532] |
1 11 21 31 41 51
| | | | | |
1 RFRGDLETKG DTLFQDLIRK YIVHKPCFTF SIQGSEEFSK SLDDEEQTRL REKITALDEQ 60
61 DKKNIFKRGI LLQEKQNEKE DLSCL
|
| Detection Method: | |
| Confidence: | 91.69897 |
| Match: | 1bccA_ |
| Description: | Cytochrome bc1 core subunit 1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [533-698] |
1 11 21 31 41 51
| | | | | |
1 PTLQIKDIPR AGDKYSIEQK NNTMSRITDT NGITYVRGKR LLNDIIPFEL FPYLPLFAES 60
61 LTNLGTTTES FSEIEDQIKL HTGGISTHVE VTSDPNTTEP RLIFGFDGWS LNSKTDHIFE 120
121 FWSKILLETD FHKNSDKLKV LIRLLASSNT SSVADAGHAF ARGYSA
|
|
Region B: Residues: [723-792] |
1 11 21 31 41 51
| | | | | |
1 LHSLLDNEET FQREVVDKLT ELQKYIVDTN NMNFFITSDS DVQAKTVESQ ISKFMERLPH 60
61 GSCLPNGPKT
|
| Detection Method: | |
| Confidence: | 19.0 |
| Match: | 1ezvB_ |
| Description: | Cytochrome bc1 core subunit 2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [699-722] |
1 11 21 31 41 51
| | | | | |
1 AHYRSSGAIN ETLNGIEQLQ FINR
|
|
Region B: Residues: [793-916] |
1 11 21 31 41 51
| | | | | |
1 SDYPLIGSKC KHTLIKFPFQ VHYTSQALLG VPYTHKDGSA LQVMSNMLTF KHLHREVREK 60
61 GGAYGGGASY SALAGIFSFY SYRDPQPLKS LETFKNSGRY ILNDAKWGVT DLDEAKLTIF 120
121 QQVD
|
| Detection Method: | |
| Confidence: | 19.0 |
| Match: | 1ezvB_ |
| Description: | Cytochrome bc1 core subunit 2 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [917-989] |
1 11 21 31 41 51
| | | | | |
1 APKSPKGEGV TYFMSGVTDD MKQARREQLL DVSLLDVHRV AEKYLLNKEG VSTVIGPGIE 60
61 GKTVSPNWEV KEL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
