| Protein: | RAD30 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 632 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD30.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..632] | [1..632] |
|
|
0.0 | [24..624] | [7..563] |
|
|
0.0 | [23..615] | [6..549] |
|
Region A: Residues: [1-33] |
1 11 21 31 41 51
| | | | | |
1 MSKFTWKELI QLGSPSKAYE SSLACIAHID MNA
|
|
Region B: Residues: [122-299] |
1 11 21 31 41 51
| | | | | |
1 EDHKVSLEPY RRESRKALKI FKSACDLVER ASIDEVFLDL GRICFNMLMF DNEYELTGDL 60
61 KLKDALSNIR EAFIGGNYDI NSHLPLIPEK IKSLKFEGDV FNPEGRDLIT DWDDVILALG 120
121 SQVCKGIRDS IKDILGYTTS CGLSSTKNVC KLASNYKKPD AQTIVKNDCL LDFLDCGK
|
| Detection Method: |  |
| Confidence: | 10119.0 |
| Match: | 1jihA_ |
| Description: | DNA polymerase eta |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA-directed DNA polymerase activity | 8.5725258398851 | bayes_pls_golite062009 |
| DNA polymerase activity | 8.52309706572764 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 6.34496739872612 | bayes_pls_golite062009 |
| DNA primase activity | 5.34779288251618 | bayes_pls_golite062009 |
| chromatin binding | 2.18085270555452 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.74380808085854 | bayes_pls_golite062009 |
| DNA binding | 1.69096430884207 | bayes_pls_golite062009 |
| nucleic acid binding | 1.57540655259696 | bayes_pls_golite062009 |
| binding | 1.40175931463327 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.06010018021303 | bayes_pls_golite062009 |
| catalytic activity | 1.04899053677564 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.83818211151495 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.83818211151495 | bayes_pls_golite062009 |
| transferase activity | 0.784455099927681 | bayes_pls_golite062009 |
| exonuclease activity | 0.778608024896469 | bayes_pls_golite062009 |
| damaged DNA binding | 0.39441061793492 | bayes_pls_golite062009 |
| protein binding | 0.354190470641287 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.0700154911930899 | bayes_pls_golite062009 |
|
Region A: Residues: [34-121] |
1 11 21 31 41 51
| | | | | |
1 FFAQVEQMRC GLSKEDPVVC VQWNSIIAVS YAARKYGISR MDTIQEALKK CSNLIPIHTA 60
61 VFKKGEDFWQ YHDGCGSWVQ DPAKQISV
|
|
Region B: Residues: [300-388] |
1 11 21 31 41 51
| | | | | |
1 FEITSFWTLG GVLGKELIDV LDLPHENSIK HIRETWPDNA GQLKEFLDAK VKQSDYDRST 60
61 SNIDPLKTAD LAEKLFKLSR GRYGLPLSS
|
| Detection Method: | |
| Confidence: | 10119.0 |
| Match: | 1jihA_ |
| Description: | DNA polymerase eta |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.3375695352073 | bayes_pls_golite062009 |
| DNA binding | 3.28852346568913 | bayes_pls_golite062009 |
| nucleic acid binding | 3.28464324017293 | bayes_pls_golite062009 |
| binding | 2.56809202445862 | bayes_pls_golite062009 |
| structure-specific DNA binding | 2.42858975345257 | bayes_pls_golite062009 |
| transcription factor activity | 2.32991522163341 | bayes_pls_golite062009 |
| chromatin binding | 2.32872787634324 | bayes_pls_golite062009 |
| transcription activator activity | 1.20800295439208 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.14039305317011 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.752135837564561 | bayes_pls_golite062009 |
| transcription repressor activity | 0.733541244206639 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.564341752288536 | bayes_pls_golite062009 |
| transcription factor binding | 0.547857728784058 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
|
Region A: Residues: [389-530] |
1 11 21 31 41 51
| | | | | |
1 RPVVKSMMSN KNLRGKSCNS IVDCISWLEV FCAELTSRIQ DLEQEYNKIV IPRTVSISLK 60
61 TKSYEVYRKS GPVAYKGINF QSHELLKVGI KFVTDLDIKG KNKSYYPLTK LSMTITNFDI 120
121 IDLQKTVVDM FGNQVHTFKS SA
|
| Detection Method: | |
| Confidence: | 10119.0 |
| Match: | 1jihA_ |
| Description: | DNA polymerase eta |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [531-632] |
1 11 21 31 41 51
| | | | | |
1 GKEDEEKTTS SKADEKTPKL ECCKYQVTFT DQKALQEHAD YHLALKLSEG LNGAEESSKN 60
61 LSFGEKRLLF SRKRPNSQHT ATPQKKQVTS SKNILSFFTR KK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
