| Protein: | RBG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 369 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBG1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-95 | [1..369] | [1..368] |
|
|
6.0E-93 | [4..369] | [3..363] |
|
|
6.0E-93 | [4..369] | [3..364] |
|
|
1.0E-92 | [4..369] | [3..364] |
|
|
2.0E-92 | [1..369] | [1..367] |
|
Region A: Residues: [1-268] |
1 11 21 31 41 51
| | | | | |
1 MSTTVEKIKA IEDEMARTQK NKATSFHLGQ LKAKLAKLRR ELLTSASSGS GGGAGIGFDV 60
61 ARTGVASVGF VGFPSVGKST LLSKLTGTES EAAEYEFTTL VTVPGVIRYK GAKIQMLDLP 120
121 GIIDGAKDGR GRGKQVIAVA RTCNLLFIIL DVNKPLHHKQ IIEKELEGVG IRLNKTPPDI 180
181 LIKKKEKGGI SITNTVPLTH LGNDEIRAVM SEYRINSAEI AFRCDATVDD LIDVLEASSR 240
241 RYMPAIYVLN KIDSLSIEEL ELLYRIPN
|
| Detection Method: |  |
| Confidence: | 33.69897 |
| Match: | 1egaA_ |
| Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [269-369] |
1 11 21 31 41 51
| | | | | |
1 AVPISSGQDW NLDELLQVMW DRLNLVRIYT KPKGQIPDFT DPVVLRSDRC SVKDFCNQIH 60
61 KSLVDDFRNA LVYGSSVKHQ PQYVGLSHIL EDEDVVTILK K
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.559 | 0.018 | cytoplasm | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.512 | 0.014 | cytoplasm | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.575 | 0.006 | GTP binding | d.58.5 | GlnB-like |
| View | Download | 0.511 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.485 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.462 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.461 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.444 | N/A | N/A | d.68.4 | YhbY-like |
| View | Download | 0.435 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.432 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.431 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.426 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.423 | N/A | N/A | a.4.3 | ARID-like |
| View | Download | 0.418 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.414 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.413 | N/A | N/A | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.401 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.401 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.397 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.394 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.393 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.386 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.378 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.378 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.376 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.370 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.367 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.365 | N/A | N/A | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.358 | N/A | N/A | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.355 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.353 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.353 | N/A | N/A | a.28.1 | ACP-like |
| View | Download | 0.350 | N/A | N/A | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.346 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.345 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.344 | N/A | N/A | c.55.5 | MTH1175-like |
| View | Download | 0.341 | N/A | N/A | c.15.1 | BRCT domain |
| View | Download | 0.339 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.338 | N/A | N/A | a.158.1 | F-box domain |
| View | Download | 0.338 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.338 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.337 | N/A | N/A | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.329 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.325 | N/A | N/A | d.58.13 | Anticodon-binding domain of PheRS |
| View | Download | 0.319 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.314 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.310 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.308 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.306 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.304 | N/A | N/A | d.75.2 | DNA repair protein MutS, domain I |
| View | Download | 0.302 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.299 | N/A | N/A | d.75.2 | DNA repair protein MutS, domain I |
| View | Download | 0.297 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.296 | N/A | N/A | d.75.2 | DNA repair protein MutS, domain I |
| View | Download | 0.295 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.293 | N/A | N/A | c.30.1 | PreATP-grasp domain |
| View | Download | 0.291 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.288 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.287 | N/A | N/A | d.58.47 | Hypothetical protein VC0424 |
| View | Download | 0.286 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.285 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.279 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.277 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.276 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.273 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.272 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.270 | N/A | N/A | c.54.1 | IIA domain of mannose transporter, IIA-Man |
| View | Download | 0.262 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.259 | N/A | N/A | c.31.1 | DHS-like NAD/FAD-binding domain |
| View | Download | 0.258 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.256 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.256 | N/A | N/A | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.255 | N/A | N/A | d.236.1 | DNA-binding protein Tfx |
| View | Download | 0.254 | N/A | N/A | c.61.1 | PRTase-like |
| View | Download | 0.250 | N/A | N/A | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.248 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.247 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.246 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.244 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.243 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.242 | N/A | N/A | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.239 | N/A | N/A | c.95.1 | Thiolase-like |
| View | Download | 0.239 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.238 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.238 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.235 | N/A | N/A | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.229 | N/A | N/A | d.129.4 | Cell-division protein ZipA, C-terminal domain |
| View | Download | 0.229 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.229 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.222 | N/A | N/A | d.58.27 | Translational regulator protein regA |
| View | Download | 0.219 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.219 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.218 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.216 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.216 | N/A | N/A | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.214 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.210 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.209 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.208 | N/A | N/A | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.206 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.205 | N/A | N/A | d.129.4 | Cell-division protein ZipA, C-terminal domain |
| View | Download | 0.201 | N/A | N/A | c.23.4 | Succinyl-CoA synthetase domains |
| View | Download | 0.201 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| Term | Confidence | Notes |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.09956015274464 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 1.89320355239381 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 1.88721318481223 | bayes_pls_golite062009 |
| GTP binding | 1.87900088157196 | bayes_pls_golite062009 |
| DNA binding | 1.87765278833074 | bayes_pls_golite062009 |
| GTPase activity | 1.23010905798386 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.21658213854831 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.21652144153182 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.21571071905795 | bayes_pls_golite062009 |
| nucleotide binding | 1.20347573865566 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| motor activity | 0.926612891775441 | bayes_pls_golite062009 |
| transcription factor activity | 0.682439846757997 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.498311726132348 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.219555040684154 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.198256709027213 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.197994873032963 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| helicase activity | 0.0775311459068899 | bayes_pls_golite062009 |
