| Protein: | CCR4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 837 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCR4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..837] | [1..837] |
|
|
0.0 | [339..832] | [98..585] |
|
|
0.0 | [1..544] | [103..687] |
|
|
0.0 | [328..832] | [152..678] |
|
|
0.0 | [331..824] | [26..530] |
|
|
0.0 | [331..828] | [44..559] |
|
|
0.0 | [336..835] | [244..734] |
|
|
0.0 | [2..583] | [115..689] |
|
Region A: Residues: [1-397] |
1 11 21 31 41 51
| | | | | |
1 MNDPSLLGYP NVGPQQQQQQ QQQQHAGLLG KGTPNALQQQ LHMNQLTGIP PPGLMNNSDV 60
61 HTSSNNNSRQ LLDQLANGNA NMLNMNMDNN NNNNNNNNNN NNNGGGSGVM MNASTAAVNS 120
121 IGMVPTVGTP VNINVNASNP LLHPHLDDPS LLNNPIWKLQ LHLAAVSAQS LGQPNIYARQ 180
181 NAMKKYLATQ QAQQAQQQAQ QQAQQQVPGP FGPGPQAAPP ALQPTDFQQS HIAEASKSLV 240
241 DCTKQALMEM ADTLTDSKTA KKQQPTGDST PSGTATNSAV STPLTPKIEL FANGKDEANQ 300
301 ALLQHKKLSQ YSIDEDDDIE NRMVMPKDSK YDDQLWHALD LSNLQIFNIS ANIFKYDFLT 360
361 RLYLNGNSLT ELPAEIKNLS NLRVLDLSHN RLTSLPA
|
| Detection Method: |  |
| Confidence: | 16.221849 |
| Match: | 1jl5A_ |
| Description: | Leucine rich effector protein YopM |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [398-458] |
1 11 21 31 41 51
| | | | | |
1 ELGSCFQLKY FYFFDNMVTT LPWEFGNLCN LQFLGVEGNP LEKQFLKILT EKSVTGLIFY 60
61 L
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 1k14A_ |
| Description: | No description for 1k14A_ was found. |
| Term | Confidence | Notes |
| hydrolase activity | 3.03637986118891 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 2.85165370336889 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.64138912616286 | bayes_pls_golite062009 |
| transcription regulator activity | 2.38142407142222 | bayes_pls_golite062009 |
| nucleic acid binding | 2.36300991054709 | bayes_pls_golite062009 |
| DNA binding | 2.34848945028683 | bayes_pls_golite062009 |
| exonuclease activity | 2.30441725834613 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 2.03997717198568 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 1.84704109624149 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 1.84015252069596 | bayes_pls_golite062009 |
| binding | 1.77207262408714 | bayes_pls_golite062009 |
| catalytic activity | 1.63030570728465 | bayes_pls_golite062009 |
| nuclease activity | 1.43406183661088 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.3192080792879 | bayes_pls_golite062009 |
| transcription repressor activity | 1.14505069034044 | bayes_pls_golite062009 |
| oxidoreductase activity | 1.01237142327007 | bayes_pls_golite062009 |
| ribonuclease activity | 0.921398762372674 | bayes_pls_golite062009 |
| transcription activator activity | 0.794530147502372 | bayes_pls_golite062009 |
| transcription factor binding | 0.676190329566283 | bayes_pls_golite062009 |
| protein binding | 0.477100720412367 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.456888438009074 | bayes_pls_golite062009 |
| phosphatase activity | 0.36890149558152 | bayes_pls_golite062009 |
| phosphoric ester hydrolase activity | 0.323823757876148 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 0.299808718537723 | bayes_pls_golite062009 |
| endonuclease activity | 0.122198690326292 | bayes_pls_golite062009 |
|
Region A: Residues: [459-837] |
1 11 21 31 41 51
| | | | | |
1 RDNRPEIPLP HERRFIEINT DGEPQREYDS LQQSTEHLAT DLAKRTFTVL SYNTLCQHYA 60
61 TPKMYRYTPS WALSWDYRRN KLKEQILSYD SDLLCLQEVE SKTFEEYWVP LLDKHGYTGI 120
121 FHAKARAKTM HSKDSKKVDG CCIFFKRDQF KLITKDAMDF SGAWMKHKKF QRTEDYLNRA 180
181 MNKDNVALFL KLQHIPSGDT IWAVTTHLHW DPKFNDVKTF QVGVLLDHLE TLLKEETSHN 240
241 FRQDIKKFPV LICGDFNSYI NSAVYELINT GRVQIHQEGN GRDFGYMSEK NFSHNLALKS 300
301 SYNCIGELPF TNFTPSFTDV IDYIWFSTHA LRVRGLLGEV DPEYVSKFIG FPNDKFPSDH 360
361 IPLLARFEFM KTNTGSKKV
|
| Detection Method: | |
| Confidence: | 14.32 |
| Match: | 1hd7A |
| Description: | DNA repair endonuclease Hap1 |
Matching Structure (courtesy of the PDB): |
|
