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Protein Overview: ccr4

General Information:
Name(s) found: ccr4 / SPCC31H12.08c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • CCR4-Not complex subunit Ccr4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 690 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    CCR4-NOT core complex [ISSLink to PubMed article]
    Biological Process: RNA elongation [ICLink to PubMed article]
    nuclear-transcribed mRNA poly(A) tail shortening [ISSLink to PubMed article]
    Molecular Function: magnesium ion binding [IEA]
    poly(A)-specific ribonuclease activity [IEA]
    3'-5'-exoribonuclease activity [ISSLink to PubMed article]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNPRYTQGT IYPGAHPGLL TPDHQHAAIL SVQNSPALEN SNISEHWKQQ IALATQSRSF  60
   61 SSPHQRAHNA AALARSGGPG FSMNYNARTG AFTGGPNAAG LSSLGGKYNT SSTTTTLTTS 120
  121 TTLNTSSGTT LNSTSKTTTS SVAVDDQKSK SDSKKERRDW TCLDLGGIGL RNVSTDLFKF 180
  181 SFLTELYINH NNLTRLPPEI GKLKNLVILD ASGNSIKTIP PELGLLTELR EVLLFDNMIS 240
  241 VIPAELGTLF QLKILGIEGN PLQDVYKNQI MESGTAGLIA ALRDGCPVGP PPPERGWEKL 300
  301 VSDDDDDVND NVSTSVRDLT AADSNKPSTT SKNLKFTIMS YNVLCERYAT STLYGYTPSW 360
  361 ALSWSYRKDL IMQELGGYNA DIICLQEVDV ENYDTFFAPQ MSLKGYKGVH FPKSRVRTMN 420
  421 EVERRIVDGC ATFFKTSKYV MHEKMVIEYN QAPSLRRQDI KLTSNMYNRV MTKDNISVIT 480
  481 LLENKENGSR LIVANCHIHW DPQFRDVKVI QVAMLMDEIA QVATKFRNMP SKIPSDQLKD 540
  541 ERPTYPEYLK IPILICGDFN SVQGSGVYDF LSSGSISQNH EDFMNNDYGE YTVNGRSHAF 600
  601 NLKSAYGESE ALSFTNYTPG FKGAIDHIWY TGNSLEVTGL LKGVDKDYLS GVVGFPNAHF 660
  661 PSDHICLLAE FKVKQEKTPL PSSKFNNDKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..561] PSI-BLAST 24.045757 The molecular structure of toll-like receptor 3 ligand binding domain
    2 View Details [562..690] FFAS03 1.77 No description for 2ddrA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle