YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258267, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258267, gi|....

Description	E-value	Query Range	Subject Range
gi\|150390667, gi... - gi\|77683645\|ref\|ZP_00799091.1\| Binding-protein-dependent transport systems inner membrane component ...	5.0E-38	[2..264]	[27..298]
gi\|110620064, gi... - gi\|147921516\|ref\|YP_684668.1\| putative ABC-type peptide transport system, permease component 2 [uncu...	7.0E-38	[9..264]	[38..302]
gi\|10172642, gi\|... - gi\|15612593\|ref\|NP_240896.1\| oligopeptide ABC transporter (permease) [Bacillus halodurans C-125], gi... gi\|25296705 - pir\|\|F83653 oligopeptide ABC transporter (permease) BH0030 [imported] - Bacillus halodurans (strain ...	8.0E-36	[9..264]	[31..295]
gi\|3885482 - gi\|3885482\|gb\|AAC77916.1\| hypothetical protein transporter [Rhodococcus fascians]	3.0E-35	[5..264]	[311..579]
gi\|158140582, gi... - gi\|158320383\|ref\|YP_001512890.1\| binding-protein-dependent transport systems inner membrane componen...	4.0E-35	[10..264]	[34..297]
gi\|84687296, gi\|... - gi\|84687296\|ref\|ZP_01015176.1\| peptide/opine/nickel uptake family ABC transporter,permease/ATP-bindi...	4.0E-35	[6..264]	[2..270]
DPPC_BACSU - Dipeptide transport system permease protein DppC OS=Bacillus subtilis (strain 168) GN=dppC PE=2 SV=2 gi\|221318403 - gi\|221318403\|ref\|ZP_03599697.1\| dipeptide ABC transporter (permease) [Bacillus subtilis subsp. subti... gi\|221322677 - gi\|221322677\|ref\|ZP_03603971.1\| dipeptide ABC transporter (permease) [Bacillus subtilis subsp. subti... DPPC_BACSU - Dipeptide transport system permease protein dppC OS=Bacillus subtilis GN=dppC PE=2 SV=2 gi\|221313481 - gi\|221313481\|ref\|ZP_03595286.1\| dipeptide ABC transporter (permease) [Bacillus subtilis subsp. subti...	9.0E-35	[7..264]	[47..314]
DPPC_BACPE - Dipeptide transport system permease protein DppC OS=Bacillus pseudofirmus (strain OF4) GN=dppC PE=3 ... gi\|11277274, gi\|... - gi\|1813497\|gb\|AAB41690.1\| dipeptide transporter protein DppC [Bacillus firmus], pir\|\|T44637 dipeptid... DPPC_BACPF - Dipeptide transport system permease protein dppC OS=Bacillus pseudofirmus GN=dppC PE=3 SV=1	1.0E-34	[2..264]	[27..298]
gi\|23100522, gi\|... - gi\|23100522\|ref\|NP_693989.1\| oligopeptide ABC transporter permease [Oceanobacillus iheyensis HTE831]...	1.0E-34	[11..263]	[32..293]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDVTIYSKS IPKPPSKLKH MLTAVLVILL LWGSSVQVDA SLSKLVVGFP NMMDLLKEMV  60
   61 PPDWSYFQVI TTAMLDTIRM AIIGTTLGAI LAIPLALCAA SNVFTSTFLY IPARMILNFI 120
  121 RTIPDLLLAA IFVAIFGIGP LPGILALTFF SIGLVAKLFY ESIESIDPGP LEAMTAVGAN 180
  181 KVQWIVYGVI PQVKAHFVSY VLYTFEVNVR AAAVLGLVGA GGIGLYYDRT LGFLQYQQTA 240
  241 SIIIYTLVVV LLIDYVSTLL REKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.221849
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	3.90877533326679	bayes_pls_golite062009
anion transmembrane transporter activity	3.22955827660391	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.14931335059246	bayes_pls_golite062009
ion transmembrane transporter activity	3.04751896510563	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.01216910575293	bayes_pls_golite062009
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
cation transmembrane transporter activity	1.84323586388655	bayes_pls_golite062009
sulfate transmembrane transporter activity	1.83763905627336	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.72066032465194	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.86861612741394	bayes_pls_golite062009
catalytic activity	0.79821499476005	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	0.01675459008512	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	0.01675459008512	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: