YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262879, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262879, gi|....

Description	E-value	Query Range	Subject Range
gi\|29377126, gi\|... - gi\|29377126\|ref\|NP_816280.1\| glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-bi... gi\|227554134, gi... - gi\|227554134\|ref\|ZP_03984181.1\| glycine betaine/carnitine/choline ABC superfamily ATP binding casset... gi\|229305475, gi... - gi\|229549238\|ref\|ZP_04437963.1\| glycine betaine/carnitine/choline ABC superfamily ATP binding casset... gi\|238857201, gi... - gi\|238857201\|ref\|ZP_04647451.1\| glycine betaine/L-proline ABC transporter, glycine betaine/L-proline...	2.0E-34	[31..265]	[43..273]
gi\|22537935, gi\|... - gi\|22537935\|ref\|NP_688786.1\| amino acid ABC transporter, permease protein [Streptococcus agalactiae ... gi\|76585744, gi\|... - gi\|76798898\|ref\|ZP_00781104.1\| amino acid ABC transporter, permease protein [Streptococcus agalactia...	3.0E-34	[33..268]	[48..279]
gi\|25011877, gi\|... - gi\|25011877\|ref\|NP_736272.1\| hypothetical protein gbs1838 [Streptococcus agalactiae NEM316], gi\|2441... gi\|77160043, gi\|... - gi\|77413910\|ref\|ZP_00790086.1\| amino acid ABC transporter, permease protein [Streptococcus agalactia...	1.0E-33	[33..268]	[48..279]
gi\|139473033, gi... - gi\|139473033\|ref\|YP_001127748.1\| putative glycine-betaine binding permease protein [Streptococcus py... gi\|50902624, gi\|... - gi\|50913550\|ref\|YP_059522.1\| glycine betaine transport system permease protein [Streptococcus pyogen...	4.0E-33	[37..281]	[48..290]
gi\|94989669, gi\|... - gi\|94989669\|ref\|YP_597769.1\| glycine betaine-binding protein / glycine betaine transport system perm...	5.0E-32	[37..281]	[48..290]
gi\|94547068, gi\|... - gi\|94993560\|ref\|YP_601658.1\| Glycine betaine-binding protein / Glycine betaine transport system perm...	5.0E-32	[37..281]	[48..290]
gi\|71909972, gi\|... - gi\|71909972\|ref\|YP_281522.1\| glycine betaine-binding protein/glycine betaine transport system permea...	5.0E-32	[37..281]	[48..290]
gi\|19745348, gi\|... - gi\|19747452\|gb\|AAL96983.1\| putative glycine-betaine binding permease protein [Streptococcus pyogenes...	6.0E-32	[37..281]	[48..290]
gi\|71902822, gi\|... - gi\|71902822\|ref\|YP_279625.1\| glycine betaine transport system permease protein [Streptococcus pyogen...	6.0E-32	[37..281]	[48..290]
gi\|13621479, gi\|... - gi\|15674389\|ref\|NP_268563.1\| putative glycine-betaine binding permease protein [Streptococcus pyogen...	7.0E-32	[37..281]	[48..290]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTKAVIKR ASITIEKNNV KKVQKTNIKF LIRAITIPII ILIIWQLAGV FGLVSKTVLP  60
   61 TPLDIFVAFQ ELIKTGELFG HLSISVFRAA AGFFIGGSLG IILGTIVGFS TRSEQYLDPS 120
  121 VQMLRTVPHL AVAPLFVLWF GFGETSKVLL IADGAFFPLY VNAFLGIRGV DSKLFDVARV 180
  181 LEFSKRKLIT KLILPATLPN LLLGARLSLG VAWVSLVVAE LMGSTEGIGY MIMDARQFSN 240
  241 TDIVFVGIII FAFVGKFSDS LVRLLEVKFL RWRDGFKGET GN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.045757
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.53893649130886	bayes_pls_golite062009
ion transmembrane transporter activity	4.80599031209315	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
anion transmembrane transporter activity	4.31857901976294	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.91726681273811	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
primary active transmembrane transporter activity	3.78071702105421	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.78024819585319	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.76480875126102	bayes_pls_golite062009
substrate-specific transporter activity	3.65928254714629	bayes_pls_golite062009
cation transmembrane transporter activity	3.63784573073205	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.36202705572288	bayes_pls_golite062009
ATPase activity, coupled	3.13976951511862	bayes_pls_golite062009
ATPase activity	2.90304684848114	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.85886572725081	bayes_pls_golite062009
pyrophosphatase activity	2.78799656158331	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.76854894183109	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.76635806953632	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.69092723642048	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.26889256489712	bayes_pls_golite062009
hydrolase activity	1.52360037846731	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.35667718087017	bayes_pls_golite062009
catalytic activity	1.19420323065978	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.118846682794	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	0.189160001609164	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	0.189160001609164	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0291867591868584	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: