YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260810, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260810, gi|....

Description	E-value	Query Range	Subject Range
gi\|150390667, gi... - gi\|77683645\|ref\|ZP_00799091.1\| Binding-protein-dependent transport systems inner membrane component ...	7.0E-58	[3..299]	[11..303]
gi\|10172642, gi\|... - gi\|15612593\|ref\|NP_240896.1\| oligopeptide ABC transporter (permease) [Bacillus halodurans C-125], gi... gi\|25296705 - pir\|\|F83653 oligopeptide ABC transporter (permease) BH0030 [imported] - Bacillus halodurans (strain ...	3.0E-56	[3..299]	[8..300]
DPPC_BACPE - Dipeptide transport system permease protein DppC OS=Bacillus pseudofirmus (strain OF4) GN=dppC PE=3 ... gi\|11277274, gi\|... - gi\|1813497\|gb\|AAB41690.1\| dipeptide transporter protein DppC [Bacillus firmus], pir\|\|T44637 dipeptid... DPPC_BACPF - Dipeptide transport system permease protein dppC OS=Bacillus pseudofirmus GN=dppC PE=3 SV=1	8.0E-56	[1..299]	[9..303]
gi\|110620064, gi... - gi\|147921516\|ref\|YP_684668.1\| putative ABC-type peptide transport system, permease component 2 [uncu...	4.0E-55	[22..300]	[34..308]
gi\|23100522, gi\|... - gi\|23100522\|ref\|NP_693989.1\| oligopeptide ABC transporter permease [Oceanobacillus iheyensis HTE831]...	1.0E-54	[6..300]	[10..300]
gi\|56378846, gi\|... - gi\|56419004\|ref\|YP_146322.1\| dipeptide ABC transporter (permease) [Geobacillus kaustophilus HTA426],...	2.0E-54	[4..299]	[7..298]
gi\|134052991, gi... - gi\|88945336\|ref\|ZP_01148513.1\| oligopeptide ABC transporter permease [Desulfotomaculum reducens MI-1...	4.0E-54	[1..300]	[1..296]
gi\|158140582, gi... - gi\|158320383\|ref\|YP_001512890.1\| binding-protein-dependent transport systems inner membrane componen...	4.0E-54	[18..299]	[25..302]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLANPEKQTE VIHYEKIPSG FSIMWREFRK DKLAMFSLFF LALILIAVYT TSFIMKQEDI  60
   61 VRVDLFAIYD PPSAEHWLGT DYGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDIFGQLIIG TRNSFTVGLA ITLLSTLIGL TMGLIAGYFG GVVDNIIMRF IDFMMILPFL  60
   61 MIVIVFISLV PTFNITTFIL IMTAFLWVGK ARLIRSKVLT EKELDYVSAS KTLGTPNWKI 120
  121 IFQQILPNLS SIIIVNITLN LAGNIGIESS LTYLGFGLPE STPSLGTLVS YATNPDVLQE 180
  181 KWWIWLPASI MILVLMLCIN FIGQALKRAA DARQRKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.53893649130886	bayes_pls_golite062009
ion transmembrane transporter activity	4.80599031209315	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
cation transmembrane transporter activity	4.07572277826928	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
primary active transmembrane transporter activity	3.78071702105421	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.78024819585319	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.76710689838502	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.76480875126102	bayes_pls_golite062009
substrate-specific transporter activity	3.65928254714629	bayes_pls_golite062009
ATPase activity, coupled	3.13976951511862	bayes_pls_golite062009
ATPase activity	2.90304684848114	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.85886572725081	bayes_pls_golite062009
pyrophosphatase activity	2.78799656158331	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.76854894183109	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.76635806953632	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.08437073771868	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.74937989644368	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.67980146745927	bayes_pls_golite062009
anion transmembrane transporter activity	1.61276316467788	bayes_pls_golite062009
hydrolase activity	1.52360037846731	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.44536001862407	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	1.03950605530203	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.798639167073698	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.72950761930647	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	0.332859286932705	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: