YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39997744, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39997744, gi|....

Description	E-value	Query Range	Subject Range
gi\|29342814, gi\|... - gi\|29375354\|ref\|NP_814508.1\| amino acid ABC transporter, amino acid-binding/permease protein [Entero... gi\|227554876, gi... - gi\|227554876\|ref\|ZP_03984923.1\| amino acid ABC superfamily ATP binding cassette transporter protein ...	175.0	[0..55]	[259..517]
gi\|62464008 - gi\|62464008\|ref\|ZP_00383312.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	170.0	[0..55]	[258..493]
gi\|125624721, gi... - gi\|125624721\|ref\|YP_001033204.1\| glutamine ABC transporter permease and substrate binding protein [L... gi\|62421458 - gi\|62421458\|gb\|AAX82492.1\| GlnP [Lactococcus lactis subsp. cremoris]	169.0	[0..55]	[258..503]
gi\|254879962 - gi\|254879962\|ref\|ZP_05252672.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|254852338 - gi\|254852338\|ref\|ZP_05241686.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|254993068 - gi\|254993068\|ref\|ZP_05275258.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|47092054, gi\|... - gi\|47092054\|ref\|ZP_00229847.1\| glutamine ABC transporter, permease/substrate-binding protein [Lister... gi\|133735858, gi... - gi\|254931228\|ref\|ZP_05264587.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|153166167, gi... - gi\|153166167\|ref\|ZP_01926786.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|254823885 - gi\|254823885\|ref\|ZP_05228886.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|226223465, gi... - gi\|226223465\|ref\|YP_002757572.1\| Glutamine ABC transporter (binding and transport protein) [Listeria...	169.0	[0..55]	[259..273]
gi\|46880345, gi\|... - gi\|46907078\|ref\|YP_013467.1\| glutamine ABC transporter, permease/substrate-binding protein [Listeria... gi\|224503184 - gi\|224503184\|ref\|ZP_03671491.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|255520210 - gi\|255520210\|ref\|ZP_05387447.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|127632725, gi... - gi\|254832188\|ref\|ZP_05236843.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste...	169.0	[0..55]	[259..273]
gi\|254935857 - gi\|254935857\|ref\|ZP_05267554.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|254898981, gi... - gi\|254898981\|ref\|ZP_05258905.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|47016735, gi\|... - gi\|47094853\|ref\|ZP_00232467.1\| glutamine ABC transporter, permease/substrate-binding protein [Lister... gi\|127766174, gi... - gi\|254911531\|ref\|ZP_05261543.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste...	169.0	[0..55]	[259..273]
gi\|16802888 - gi\|16802888\|ref\|NP_464373.1\| hypothetical protein lmo0847 [Listeria monocytogenes EGD-e] gi\|25516643, gi\|... - pir\|\|AG1180 Glutamine ABC transporter (binding and transport protein) homolog lmo0847 [imported] - L...	168.0	[0..55]	[259..273]
gi\|16799914 - gi\|16799914\|ref\|NP_470182.1\| hypothetical protein lin0840 [Listeria innocua Clip11262] gi\|25517319, gi\|... - pir\|\|AH1537 Glutamine ABC transporter (binding and transport protein) homolog lin0840 [imported] - L...	167.0	[0..55]	[259..273]
gi\|76788581, gi\|... - gi\|76788581\|ref\|YP_330104.1\| polar amino acid ABC transporter permease/substrate-binding protein [St...	167.0	[0..58]	[258..519]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLFAPNDC REGGAVPLPA RIVGILIAFL LVTLIFAYAF HSLQYHWGWE SVYAYRQKFV  60
   61 NGWLMTLAIS AAALLLSLAI GLCTALTQRS RLLPLRYLGR IYVETIRGTP LLVQILVFFY 120
  121 VVADAFGVGD RYLVGVITLS LFAGAYISEM IRAGIESVGD SQMESARAIG LTRAQIYRYV 180
  181 VFPQAFRQTL PPLAGQFASI VKDSSLLSII AVSEFTLNAQ EVNAFTYSTL ESYLPLAIGY 240
  241 LAITLPISLL SRRLEKKFRY AT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.98824613202602	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
amino acid transmembrane transporter activity	1.12102819427113	bayes_pls_golite062009
catalytic activity	1.02203913157625	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.918466003981509	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.890308406193876	bayes_pls_golite062009
ion transmembrane transporter activity	0.67039520089395	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
amine transmembrane transporter activity	0.525383483850367	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: