YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345445, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	568 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345445, gi|....

Description	E-value	Query Range	Subject Range
gi\|68552975, gi\|... - gi\|68552975\|ref\|ZP_00592358.1\| AMP-dependent synthetase and ligase [Prosthecochloris aestuarii DSM 2...	460.0	[0..1]	[567..59]
gi\|78506783, gi\|... - gi\|78685405\|ref\|ZP_00850183.1\| AMP-binding family protein [Shewanella sp. ANA-3], gi\|78506783\|gb\|EAP...	460.0	[0..1]	[568..30]
gi\|78689070, gi\|... - gi\|78689070\|ref\|ZP_00853735.1\| AMP-binding family protein [Shewanella sp. MR-7], gi\|78511470\|gb\|EAP2...	459.0	[0..1]	[568..30]
gi\|113968423, gi... - gi\|82495805\|ref\|ZP_00881378.1\| AMP-binding family protein [Shewanella sp. MR-4], gi\|82406110\|gb\|EAP4...	458.0	[0..1]	[568..30]
gi\|78166736, gi\|... - gi\|78186834\|ref\|YP_374877.1\| long-chain fatty-acid-CoA ligase [Pelodictyon luteolum DSM 273], gi\|781...	458.0	[0..5]	[567..39]
gi\|110597451, gi... - gi\|110597451\|ref\|ZP_01385738.1\| AMP-dependent synthetase and ligase [Chlorobium ferrooxidans DSM 130...	453.0	[0..1]	[567..35]
gi\|71284147, gi\|... - gi\|71480780\|ref\|ZP_00660489.1\| AMP-dependent synthetase and ligase [Prosthecochloris vibrioformis DS...	452.0	[0..5]	[567..39]
gi\|119354670, gi... - gi\|67936233\|ref\|ZP_00529243.1\| AMP-dependent synthetase and ligase [Chlorobium phaeobacteroides DSM ...	451.0	[0..1]	[567..35]
gi\|82721710, gi\|... - gi\|82740943\|ref\|ZP_00903675.1\| AMP-binding family protein [Shewanella sp. W3-18-1], gi\|82721710\|gb\|E...	450.0	[0..1]	[568..30]
gi\|145562862, gi... - gi\|77814395\|ref\|ZP_00813655.1\| AMP-dependent synthetase and ligase [Shewanella putrefaciens CN-32], ...	450.0	[0..1]	[568..30]

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Predicted Domain #1

Region A:
Residues: [1-568]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPWHQVSW QAFDEISHKI AQVLIQLGVQ VQDRCVILSQ NCPQWTCADV GTLKSRAIVV  60
   61 PIYPTSTVEQ ASFIVNDAAA KVIFVDDAKQ YALACELQTL CPTLEHVIVF DAAVQLAQDK 120
  121 PQHKHLDSLL ALEYDQSAEL EQRLKDANLD DLLTLIYTSG TTGDPKGVML DYRNMASTVH 180
  181 QHDLILPFKT GDVSLAFLPL SHVFERGWSF YVLCRGGRNV YLQNTQRVKE AISAVRPHTL 240
  241 CVVPRFLEKV YSAVQDKVAK SAEGRKKLFA WAMGVGERQF EVSQGRVKGG LWLSLQWRLA 300
  301 NKLVYSKLQA VLGGRLKFMP CGGAALDLNV ASFFHAIGIP VLCGYGMTET NATVTCNTLD 360
  361 NRVAGSNGKV LPEIQIKLGK DDEILVRGDT VMRGYYNRPE DTAAAFEDGW LKTGDAGRLD 420
  421 AHGNLFITDR IKELMKTSNG KYIAPQRVEG TVGRCPFIEQ VAVIADARNY VTALIVPAFE 480
  481 SLEAWAKEKG LKYESPIELL RHSHVVEHFE QRLKHLQQEL AGFEQIKKFT LLPEAFSMEA 540
  541 GLITPTLKLR RKMIYHKYVH EINAMYNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.30103
Match:	1ba3A
Description:	FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
fatty acid ligase activity	4.83067429373059	bayes_pls_golite062009
long-chain fatty acid-CoA ligase activity	4.72692389032116	bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds	3.91760861837127	bayes_pls_golite062009
acid-thiol ligase activity	3.07782226172454	bayes_pls_golite062009
CoA-ligase activity	2.9342873477171	bayes_pls_golite062009
Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity	2.74744781333102	bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	2.74744781333102	bayes_pls_golite062009
luciferin monooxygenase activity	2.67396462766343	bayes_pls_golite062009
lipid transporter activity	2.59608399999188	bayes_pls_golite062009
fatty acid transporter activity	2.59273384982209	bayes_pls_golite062009
ligase activity	2.49556073715112	bayes_pls_golite062009
acetate-CoA ligase activity	2.48713831233526	bayes_pls_golite062009
catalytic activity	1.83545185797733	bayes_pls_golite062009
binding	1.5312519256537	bayes_pls_golite062009
transcription regulator activity	1.51984692702316	bayes_pls_golite062009
transporter activity	1.29780964436121	bayes_pls_golite062009
branched-chain aliphatic amino acid transmembrane transporter activity	1.18574343794772	bayes_pls_golite062009
organic acid transmembrane transporter activity	1.12905679329698	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	1.11961482903654	bayes_pls_golite062009
transmembrane transporter activity	1.07143339827205	bayes_pls_golite062009
substrate-specific transporter activity	1.03753946113449	bayes_pls_golite062009
long-chain fatty acid transporter activity	0.914069798020245	bayes_pls_golite062009
hydrolase activity	0.793506623954019	bayes_pls_golite062009
amine transmembrane transporter activity	0.75860693537743	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.54797726647835	bayes_pls_golite062009
adenyl ribonucleotide binding	0.340243634970102	bayes_pls_golite062009
adenyl nucleotide binding	0.320997446710099	bayes_pls_golite062009
active transmembrane transporter activity	0.251681382273558	bayes_pls_golite062009
primary active transmembrane transporter activity	0.225448500718996	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.216579620878492	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.177812048124158	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.174283007890308	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.173963339749644	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.149232835558857	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.0401881910649647	bayes_pls_golite062009
pyrophosphatase activity	0.0047964784091391	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: