| Protein: | VPS41_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 992 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS41_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..992] | [1..992] |
|
|
0.0 | [74..985] | [11..837] |
|
|
0.0 | [74..989] | [17..853] |
|
|
0.0 | [82..983] | [11..791] |
|
|
0.0 | [77..977] | [2..791] |
|
|
0.0 | [181..980] | [62..759] |
|
|
0.0 | [212..983] | [28..841] |
|
Region A: Residues: [1-375] |
1 11 21 31 41 51
| | | | | |
1 MTTDNHQNDS VLDQQSGERT IDESNSISDE NNVDNKREDV NVTSPTKSVS CISQAENGVA 60
61 SRTDESTITG SATDAETGDD DDDDDDDDDE DEDDEDEPPL LKYTRISQLP KNFFQRDSIS 120
121 SCLFGDTFFA FGTHSGILHL TTCAFEPIKT IKCHRSSILC INTDGKYFAT GSIDGTVIIG 180
181 SMDDPQNITQ YDFKRPINSV ALHSNFQASR MFVSGGMAGD VVLSQRNWLG NRIDIVLNKK 240
241 KKKKTRKDDL SSDMKGPIMG IYTMGDLILW MDDDGITFCD VPTRSQLLNI PFPSRIFNVQ 300
301 DVRPDLFRPH VHFLESDRVV IGWGSNIWLF KVSFTKDSNS IKSGDSNSQS NNMSHFNPTT 360
361 NIGSLLSSAA SSFRG
|
| Detection Method: |  |
| Confidence: | 57.0 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 2.20122168933317 | bayes_pls_golite062009 |
| binding | 1.99637157021613 | bayes_pls_golite062009 |
| actin binding | 1.40054662654509 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| tubulin binding | 1.10875870970504 | bayes_pls_golite062009 |
| microtubule binding | 1.03769395387791 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| nucleic acid binding | 0.624115832843391 | bayes_pls_golite062009 |
| hydrolase activity | 0.36638536879917 | bayes_pls_golite062009 |
| transcription repressor activity | 0.328276176504109 | bayes_pls_golite062009 |
| transcription regulator activity | 0.282387003961579 | bayes_pls_golite062009 |
| dynein binding | 0.180120691665679 | bayes_pls_golite062009 |
| structural molecule activity | 0.0588151480189092 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [376-478] |
1 11 21 31 41 51
| | | | | |
1 TPDKKVELEC HFTVSMLITG LASFKDDQLL CLGFDIDIEE EATIDEDMKE GKNFSKRPEN 60
61 LLAKGNAPEL KIVDLFNGDE IYNDEVIMKN YEKLSINDYH LGK
|
| Detection Method: | |
| Confidence: | 68.30103 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 2.20122168933317 | bayes_pls_golite062009 |
| binding | 1.99637157021613 | bayes_pls_golite062009 |
| actin binding | 1.40054662654509 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| tubulin binding | 1.10875870970504 | bayes_pls_golite062009 |
| microtubule binding | 1.03769395387791 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| nucleic acid binding | 0.624115832843391 | bayes_pls_golite062009 |
| hydrolase activity | 0.36638536879917 | bayes_pls_golite062009 |
| transcription repressor activity | 0.328276176504109 | bayes_pls_golite062009 |
| transcription regulator activity | 0.282387003961579 | bayes_pls_golite062009 |
| dynein binding | 0.180120691665679 | bayes_pls_golite062009 |
| structural molecule activity | 0.0588151480189092 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [479-992] |
1 11 21 31 41 51
| | | | | |
1 HIDKTTPEYY LISSNDAIRV QELSLKDHFD WFMERKQYYK AWKIGKYVIG SEERFSIGLK 60
61 FLNSLVTKKD WGTLVDHLNI IFEETLNSLD SNSYDVTQNV LKEWADIIEI LITSGNIVEI 120
121 APLIPKKPAL RKSVYDDVLH YFLANDMINK FHEYITKWDL KLFSVEDFEE ELETRIEAAS 180
181 EPTASSKEEG SNITYRTELV HLYLKENKYT KAIPHLLKAK DLRALTIIKI QNLLPQYLDQ 240
241 IVDIILLPYK GEISHISKLS IFEIQTIFNK PIDLLFENRH TISVARIYEI FEHDCPKSFK 300
301 KILFCYLIKF LDTDDSFMIS PYENQLIELY SEYDRQSLLP FLQKHNNYNV ESAIEVCSSK 360
361 LGLYNELIYL WGKIGETKKA LSLIIDELKN PQLAIDFVKN WGDSELWEFM INYSLDKPNF 420
421 TKAILTCSDE TSEIYLKVIR GMSDDLQIDN LQDIIKHIVQ ENSLSLEVRD NILVIINDET 480
481 KKFANEFLKI RSQGKLFQVD ESDIEINDDL NGVL
|
| Detection Method: | |
| Confidence: | 12.83 |
| Match: | 1b89A |
| Description: | Clathrin heavy chain proximal leg segment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein transporter activity | 2.99345877012947 | bayes_pls_golite062009 |
| binding | 2.53151481871847 | bayes_pls_golite062009 |
| transporter activity | 2.3766833486706 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.12926593993985 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.67265990792668 | bayes_pls_golite062009 |
| protein binding | 1.61131270705552 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.2724388835449 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 1.12112006227201 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.04982314606251 | bayes_pls_golite062009 |
| nucleic acid binding | 1.0110931222658 | bayes_pls_golite062009 |
| actin binding | 0.864076688656138 | bayes_pls_golite062009 |
| hydrolase activity | 0.648465506487331 | bayes_pls_golite062009 |
| signal sequence binding | 0.279693431859311 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.260663498540354 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.256036243669218 | bayes_pls_golite062009 |
| structural molecule activity | 0.244712400498315 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 0.241630311762028 | bayes_pls_golite062009 |
| RNA binding | 0.235569865745441 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.234271600707329 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.225395946682209 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.186601655036333 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.183072614802483 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.182751938544977 | bayes_pls_golite062009 |
| transcription regulator activity | 0.111971004877048 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.109435859778099 | bayes_pls_golite062009 |
| clathrin binding | 0.0923079381755934 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0728493557966827 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0641324729536009 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0615190129942244 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0475280280823402 | bayes_pls_golite062009 |
| signal transducer activity | 0.0143632526449453 | bayes_pls_golite062009 |
| molecular transducer activity | 0.0143632526449453 | bayes_pls_golite062009 |
