| Protein: | UBP4_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 926 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP4_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..926] | [1..926] |
|
|
0.0 | [14..494] | [2..442] |
|
|
5.0E-99 | [344..921] | [7..557] |
|
|
4.0E-96 | [342..921] | [82..610] |
|
Region A: Residues: [1-184] |
1 11 21 31 41 51
| | | | | |
1 MEQNIISTIR DECIRHRSKY LTIAQLTAIA EAKINEFIIT GKAKDQDLSS LLDKCIDILS 60
61 IYKKNSKDIK NIISCKNKGA MISSNSVMII QLNYVYYKVI HIIVTTNIPH LSEFAKIKLH 120
121 KSTSDEGNGN NNNNEFQLMN IYNTLLETLL KDENIAKIKS FIKSSIKQTK LNHEQEECNL 180
181 MRTG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [185-335] |
1 11 21 31 41 51
| | | | | |
1 SYITSNQLNS LISSSANSAS SQMEILLIDI RSRLEFNKSH IDTKNIICLE PISFKMSYSD 60
61 HDLEKKSLIT SPNSEIKMFQ SRNLFKFIIL YTDANEYNVK QQSVLLDILV NHSFEKPISD 120
121 DFTKIFILES GFPGWLKSNY GRQVSSSFPS N
|
| Detection Method: | |
| Confidence: | 14.0 |
| Match: | 1d5vA_ |
| Description: | Adipocyte-transcription factor FREAC-11 (s12, fkh-14) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [336-561] |
1 11 21 31 41 51
| | | | | |
1 NNIKDDSVYI NGNTSGLSLQ HLPKMSPSIR HSMDDSMKEM LVAPTPLNHL QQQQQQQSDN 60
61 DHVLKRSSSF KKLFSNYTSP NPKNSNSNLY SISSLSISSS PSPLPLHSPD PVKGNSLPIN 120
121 YPETPHLWKN SETDFMTNQR EQLNHNSFAH IAPINTKAIT SPSRTATPKL QRFPQTISMN 180
181 LNMNSNGHSS ATSTIQPSCL SLSNNDSLDH TDVTPTSSHN YDLDFA
|
| Detection Method: | |
| Confidence: | 7.33 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 5.29569167054278 | bayes_pls_golite062009 |
| DNA binding | 4.90756541371868 | bayes_pls_golite062009 |
| nucleic acid binding | 4.69183445184264 | bayes_pls_golite062009 |
| transcription factor activity | 4.14166958134441 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.48053910222825 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| transcription activator activity | 2.29614125067822 | bayes_pls_golite062009 |
| transcription repressor activity | 2.19033875364989 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.48055533524841 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.27763700765562 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.12147035668008 | bayes_pls_golite062009 |
| transcription factor binding | 0.83705247708153 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.754042916649094 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.379762425417023 | bayes_pls_golite062009 |
| structural molecule activity | 0.272316540117209 | bayes_pls_golite062009 |
| signal transducer activity | 0.120341737642948 | bayes_pls_golite062009 |
| molecular transducer activity | 0.120341737642948 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.0912115683429473 | bayes_pls_golite062009 |
|
Region A: Residues: [562-753] |
1 11 21 31 41 51
| | | | | |
1 VGLENLGNSC YMNCIIQCIL GTHELTQIFL DDSYAKHINI NSKLGSKGIL AKYFARLVHM 60
61 MYKEQVDGSK KISISPIKFK LACGSVNSLF KTASQQDCQE FCQFLLDGLH EDLNQCGSNP 120
121 PLKELSQEAE ARREKLSLRI ASSIEWERFL TTDFSVIVDL FQGQYASRLK CKVCSHTSTT 180
181 YQPFTVLSIP IP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [754-926] |
1 11 21 31 41 51
| | | | | |
1 KKNSRNNITI EDCFREFTKC ENLEVDEQWL CPHCEKRQPS TKQLTITRLP RNLIVHLKRF 60
61 DNLLNKNNDF VIYPFLLDLT PFWANDFDGV FPPGVNDDEL PIRGQIPPFK YELYGVACHF 120
121 GTLYGGHYTA YVKKGLKKGW LYFDDTKYKP VKNKADAINS NAYVLFYHRV YGV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
