| Protein: | LDB19_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 818 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDB19_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..818] | [1..818] |
|
|
2.0E-86 | [109..352] | [20..250] |
|
|
8.0E-78 | [115..346] | [145..366] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MAFSRLTSTH QSNHNGYSNS NKKGQSLPLT LSIDVESPPC VLYGSAMESS GAVLSGLFTV 60
61 TVVDPYSSAE DKSLKNTES
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.418 | g.7.1 | Snake toxin-like |
| View | Download | 0.357 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.377 | g.7.1 | Snake toxin-like |
| View | Download | 0.331 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.310 | b.1.1 | Immunoglobulin |
| View | Download | 0.295 | d.10.1 | DNA-binding domain |
| View | Download | 0.259 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.258 | d.10.1 | DNA-binding domain |
| View | Download | 0.251 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.250 | d.9.2 | Description not found. |
| View | Download | 0.206 | b.1.2 | Fibronectin type III |
| View | Download | 0.203 | b.1.1 | Immunoglobulin |
| Term | Confidence | Notes |
| clathrin binding | 2.57748868504781 | bayes_pls_golite062009 |
| binding | 2.01341910518392 | bayes_pls_golite062009 |
| protein binding | 1.608080422834 | bayes_pls_golite062009 |
| transporter activity | 1.10239137184953 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.949536954960448 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.781060752903079 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.660409340901077 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.56446678342098 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.486294295028555 | bayes_pls_golite062009 |
| channel activity | 0.465630241372545 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.465630241372545 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.455589501590218 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 0.44519612509266 | bayes_pls_golite062009 |
| potassium channel activity | 0.423464159542763 | bayes_pls_golite062009 |
| cation channel activity | 0.406614358442595 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 0.402494949667906 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 0.39571309893169 | bayes_pls_golite062009 |
| ion channel activity | 0.395022246697853 | bayes_pls_golite062009 |
| voltage-gated channel activity | 0.387394052239826 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 0.326855275194847 | bayes_pls_golite062009 |
| gated channel activity | 0.266124158878986 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0852462445742306 | bayes_pls_golite062009 |
|
Region A: Residues: [80-387] |
1 11 21 31 41 51
| | | | | |
1 NVSTTSKSLK RKSTFGSALS SRLSSLSAST SNISPSTSST SISHSPTPAN LRIMAGYTKI 60
61 TITSVTLSLV QKIHFHKPFV PNISSMQTCM NCKTKITNMK SWEIQSNTQD LSVGSHSYPF 120
121 SYLIPGSVPC SSSLGATAET QVKYELIAVV TYIDPHRNSF SSGHSTPRKE GSSSKKRLLQ 180
181 LAMPIAVTRS IPRGPDKNSL RVFPPTELTA AAVLPNVVYP KSTFPLEMKL DGVSSGDRRW 240
241 RMRKLSWRIE ETTRVKAHAC PVHKHELRQL EEQVKIKESE KSKKPRSHIK RYGELGPQIR 300
301 VAVNSLEN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [388-818] |
1 11 21 31 41 51
| | | | | |
1 MPSQRLPGEP GREQAPNSSG PASTGNVGLD DENPVNEDEE DQPGSEFIHP SDDALRQELL 60
61 MQQQRARQQQ LQQELKNNSS LFTEEVRIIS KGEMKSGWKT DFDNNGKIEL VTEIDCMGLN 120
121 SGVSNPVMHA STLQTPSTGN KKPSINVACD IQDPNLGLYV SHILAVEIVV AEETLQYANG 180
181 QPIRKPNSKN KKETNNNTMN VHNPDQRLAE LSPIFANRNT PKVRRMGPED ITPVNSNKSN 240
241 HSTNKEKASN GASNSNIVSV PTGAARVLRM QFRLTVTERS GLGISWDEEV PPIYQDVELL 300
301 SPPCYELSIN NGIKNKLYST MSTPVRSEDD FVGGSDEDIG NYESQGLEPG PNVQEVTITQ 360
361 NKLTIPPTAH HYQPASSSQR SLTTVQSPPL ESVVSVQGSV PFRGHVLTPH STRDIRIQNF 420
421 SDFLDSNRIT Q
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.201 | a.64.1 | Saposin |
