| Protein: | RFC3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 354 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFC3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
244.0 | [0..1] | [339..4] |
|
Region A: Residues: [1-354] |
1 11 21 31 41 51
| | | | | |
1 MLWVDKYRPK SLDKVIVHED IAQKLKKLVS EQDCPHLLFY GPSGSGKKTL IMALLKQIYG 60
61 ASAEKVKVEN RAWKVDAGSR TIDLELTTLS STNHVELTPS DAGFQDRYIV QEIIKEMAKN 120
121 RPIDTKGKKG YKVLVLNEVD KLSREAQHSL RRTMEKYSSS CRLILCCNSS SKVTEAIKSR 180
181 CLNVRINAPS QEEIVKVLEF VAKKESLQLP QGFAARIAEK SNRSLRRAIL SLETCRVQNY 240
241 PFTGNQVISP MDWEEYVAEI ATDMMKEQSP KKLFQVRGKV YELLVNCIPP EVILKRLLHE 300
301 LLKKLDSELK LEVCHWAAYY EHRMRLGQKA IFHIEAFVAK FMSIYKNFLI STFG
|
| Detection Method: |  |
| Confidence: | 44.69897 |
| Match: | 1sxjE |
| Description: | Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA clamp loader activity | 6.51495346697904 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 6.40748863504898 | bayes_pls_golite062009 |
| mismatched DNA binding | 2.51625633651862 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.23646936731119 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| 1.85506769032946 | bayes_pls_golite062009 | |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| guanine/thymine mispair binding | 1.69026972999845 | bayes_pls_golite062009 |
| DNA insertion or deletion binding | 1.68890613599528 | bayes_pls_golite062009 |
| binding | 1.62860302498201 | bayes_pls_golite062009 |
| DNA replication origin binding | 1.62491387774159 | bayes_pls_golite062009 |
| nucleic acid binding | 1.49633029954726 | bayes_pls_golite062009 |
| catalytic activity | 1.32370671504792 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2537888487362 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| microtubule motor activity | 1.1277447806079 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| DNA binding | 0.967303417236485 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| transcription regulator activity | 0.748437190903548 | bayes_pls_golite062009 |
| single base insertion or deletion binding | 0.629563765934841 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| protein binding | 0.324679002546113 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.283577486331079 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.248432446853676 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.217252531553173 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.215962398124297 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
| ATPase activity | 0.0740243885501273 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.0320943071400439 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.0320943071400439 | bayes_pls_golite062009 |
| double-strand/single-strand DNA junction binding | 0.0136229525922795 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
