| Protein: | gi|21360461, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 577 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21360461, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
386.0 | [0..1] | [577..1] |
|
Region A: Residues: [1-364] |
1 11 21 31 41 51
| | | | | |
1 MGIKDLLRFM KPYILPIHIQ KYAGKRVGID AYSWLHKGAY SCSMELCLDT DGKKKLRYID 60
61 YFMHRVNLLQ HYEIIPVVVL DGGNMPCKAA TGDERHRKRK ANFDAAMVKL KEGNVAAATE 120
121 LFQRAVSVTS SMAHQLIQVL KSENVEFIVA PYEADAQLAY LSSLELEQGG IAAVITEDSD 180
181 LLAYGCKAVI FKMDRYGKGE ELVLDNVFQA VDQKPSFQNF DQELFTAMCV LAGCDFLPSV 240
241 PGVGISRAHA FISKYQSVEL VLSFLKTKKG KLVPDDYSSS FTEAVSVFQH ARVYDFDAKK 300
301 LKHLKPLSHN LLNLPVEQLE FLGPDLSPSV AVAIAEGNVD PITMKAFNHF SVSRKPLKTP 360
361 VRSF
|
| Detection Method: |  |
| Confidence: | 62.0 |
| Match: | 1ul1X |
| Description: | Crystal structure of the human FEN1-PCNA complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity, acting on ester bonds | 5.44893156272125 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 4.17543266498933 | bayes_pls_golite062009 |
| DNA polymerase activity | 4.1412804577877 | bayes_pls_golite062009 |
| flap endonuclease activity | 4.10438637013244 | bayes_pls_golite062009 |
| exonuclease activity | 3.99717729574528 | bayes_pls_golite062009 |
| single-stranded DNA specific exodeoxyribonuclease activity | 3.90367500308359 | bayes_pls_golite062009 |
| endonuclease activity | 3.40075034200919 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 3.29138075959109 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 3.25110450559975 | bayes_pls_golite062009 |
| 5'-3' exonuclease activity | 3.19536858640519 | bayes_pls_golite062009 |
| nuclease activity | 2.9643999717473 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 2.76402807313057 | bayes_pls_golite062009 |
| hydrolase activity | 2.4418166499042 | bayes_pls_golite062009 |
| ribonuclease activity | 2.33034300966639 | bayes_pls_golite062009 |
| 5'-3' exodeoxyribonuclease activity | 2.26658239783943 | bayes_pls_golite062009 |
| damaged DNA binding | 2.10834170214137 | bayes_pls_golite062009 |
| double-stranded DNA specific exodeoxyribonuclease activity | 2.09057967200253 | bayes_pls_golite062009 |
| binding | 2.06833406478856 | bayes_pls_golite062009 |
| nucleic acid binding | 2.02510018436829 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 2.0005433655378 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 1.9833086883205 | bayes_pls_golite062009 |
| DNA binding | 1.93844174573408 | bayes_pls_golite062009 |
| 5'-flap endonuclease activity | 1.81850767854435 | bayes_pls_golite062009 |
| single-stranded DNA specific endodeoxyribonuclease activity | 1.76913368671197 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.70042864382698 | bayes_pls_golite062009 |
| catalytic activity | 1.37534898662234 | bayes_pls_golite062009 |
| ribonuclease H activity | 1.29762010718359 | bayes_pls_golite062009 |
| single-stranded DNA specific 5'-3' exodeoxyribonuclease activity | 1.15948049342759 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.901965019685213 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.626785110524684 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.512509234493511 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.50487165366129 | bayes_pls_golite062009 |
| protein binding | 0.488846604207788 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.351084053450465 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.319622686426271 | bayes_pls_golite062009 |
| endoribonuclease activity | 0.312346277055223 | bayes_pls_golite062009 |
| single-stranded DNA specific 3'-5' exodeoxyribonuclease activity | 0.14861832363159 | bayes_pls_golite062009 |
| 3'-5'-exodeoxyribonuclease activity | 0.0205129272358 | bayes_pls_golite062009 |
|
Region A: Residues: [365-577] |
1 11 21 31 41 51
| | | | | |
1 KEQEKGSSFL VCSLSKSEEI IELKRTADEA MIDPEAIVKK KMYSKQDSDL YKLLAQPNRD 60
61 QVVTRPSNPS LIPDNNPFKI RKTDEINLEI AEYGVQELAD SFVTKSKAVD VASSSPNSHE 120
121 HEDQKECVTI DLSKLDAAGI KQDSEKNRVK ETFETTEVDL AEVQDHVNMT TKRVRGTKPR 180
181 TENFKVKTSC KSSENNKTII KKKHSILDFF QRL
|
| Detection Method: | |
| Confidence: | 24.221849 |
| Match: | 1lv5A |
| Description: | Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment) |
Matching Structure (courtesy of the PDB): |
|
