| Protein: | gi|221324376 |
| Organism: | Bacillus subtilis subsp. subtilis str. SMY |
| Length: | 579 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221324376.
| Description | E-value | Query Range |
Subject Range |
|
|
363.0 | [0..1] | [577..1] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MNKYRVRLFS VFVVCMILVF CVLGLFLQQL FETSDQRKAE EHIEKEAKYL ASLLDAGNLN 60
61 NQANEKIIKD AGGALDVSAS VIDTDGKVLY GSNGRS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [97-240] |
1 11 21 31 41 51
| | | | | |
1 ADSQKVQALV SGHEGILSTT DNKLYYGLSL RSEGEKTGYV LLSASEKSDG LKGELWGMLT 60
61 ASLCTAFIVI VYFYSSMTSR YKRSIESATN VATELSKGNY DARTYGGYIR RSDKLGHAMN 120
121 SLAIDLMEMT RTQEMQRDRL LTVI
|
| Detection Method: | |
| Confidence: | 3.48 |
| Match: | 2f95B |
| Description: | M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [241-339] |
1 11 21 31 41 51
| | | | | |
1 ENIGSGLIMI DGRGFINLVN RSYAKQFHIN PNHMLRRLYH DAFEHEEVIQ LVEDIFMTET 60
61 KKCKLLRLPI KIERRYFEVD GVPIMGPDDE WKGIVLVFH
|
| Detection Method: | |
| Confidence: | 4.09691 |
| Match: | 1y28A |
| Description: | Crystal structure of the R220A metBJFIXL HEME domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ion transmembrane transporter activity | 1.94020112661684 | bayes_pls_golite062009 |
| transcription regulator activity | 1.88422125389203 | bayes_pls_golite062009 |
| binding | 1.79230776794479 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.70629448457771 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.55042643398568 | bayes_pls_golite062009 |
| DNA binding | 1.54206275665781 | bayes_pls_golite062009 |
| two-component response regulator activity | 1.45691562840107 | bayes_pls_golite062009 |
| nucleic acid binding | 1.41817054839611 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 1.31850321187865 | bayes_pls_golite062009 |
| transcription factor activity | 1.12946889905444 | bayes_pls_golite062009 |
| protein binding | 1.0133195984081 | bayes_pls_golite062009 |
| potassium channel activity | 0.93265112299626 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 0.92661046549451 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 0.926512767264521 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 0.92204538811959 | bayes_pls_golite062009 |
| voltage-gated channel activity | 0.91469735366704 | bayes_pls_golite062009 |
| ion channel activity | 0.75430461252947 | bayes_pls_golite062009 |
| cation channel activity | 0.73262554730695 | bayes_pls_golite062009 |
| gated channel activity | 0.67217953143815 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.650205954115699 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.64202076714636 | bayes_pls_golite062009 |
| channel activity | 0.64202076714636 | bayes_pls_golite062009 |
| two-component sensor activity | 0.58151911764083 | bayes_pls_golite062009 |
| protein histidine kinase activity | 0.56538125817883 | bayes_pls_golite062009 |
| phosphotransferase activity, nitrogenous group as acceptor | 0.518111391350209 | bayes_pls_golite062009 |
| signal transducer activity | 0.441034662376355 | bayes_pls_golite062009 |
| molecular transducer activity | 0.441034662376355 | bayes_pls_golite062009 |
| transporter activity | 0.360938622392148 | bayes_pls_golite062009 |
| catalytic activity | 0.285447488878019 | bayes_pls_golite062009 |
| transcription factor binding | 0.24293756478811 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.217804199010847 | bayes_pls_golite062009 |
|
Region A: Residues: [340-579] |
1 11 21 31 41 51
| | | | | |
1 DMTETKKLEQ MRKDFVANVS HELKTPITSI KGFTETLLDG AMEDKEALSE FLSIILKESE 60
61 RLQSLVQDLL DLSKIEQQNF TLSIETFEPA KMLGEIETLL KHKADEKGIS LHLNVPKDPQ 120
121 YVSGDPYRLK QVFLNLVNNA LTYTPEGGSV AINVKPREKD IQIEVADSGI GIQKEEIPRI 180
181 FERFYRVDKD RSRNSGGTGL GLAIVKHLIE AHEGKIDVTS ELGRGTVFTV TLKRAAEKSA 240
241
|
| Detection Method: | |
| Confidence: | 55.522879 |
| Match: | 2c2aA |
| Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
|
