From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.672371841877] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mitochondrial inner membrane | 7.6048E-4 | 2 | 174 | 2 | 6292 |
organelle inner membrane | 8.5997E-4 | 2 | 185 | 2 | 6292 |
mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
nucleoid | 8.248E-3 | 2 | 26 | 1 | 6292 |
mitochondrial nucleoid | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
carboxylic acid transport | 8.6451E-5 | 2 | 59 | 2 | 6292 |
organic acid transport | 8.9432E-5 | 2 | 60 | 2 | 6292 |
oxaloacetate transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
tricarboxylic acid transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
dicarboxylic acid transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
sulfate transport | 1.2712E-3 | 2 | 4 | 1 | 6292 |
inorganic anion transport | 5.7138E-3 | 2 | 18 | 1 | 6292 |
anion transport | 7.9314E-3 | 2 | 25 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
secondary active transmembrane transporter activity | 1.6421E-5 | 2 | 26 | 2 | 6292 |
secondary active sulfate transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
oxaloacetate transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
oxaloacetate secondary active transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
active transmembrane transporter activity | 3.6682E-4 | 2 | 121 | 2 | 6292 |
tricarboxylate secondary active transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
dicarboxylic acid transmembrane transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
sulfate transmembrane transporter activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
inorganic anion transmembrane transporter activity | 4.7627E-3 | 2 | 15 | 1 | 6292 |
anion transmembrane transporter activity | 6.6645E-3 | 2 | 21 | 1 | 6292 |