| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.76275326636] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| BNA4 |
|
|
|
| GUT2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial outer membrane | 2.1151E-4 | 2 | 92 | 2 | 6292 |
| outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| organelle outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| integral to mitochondrial outer membrane | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| intrinsic to mitochondrial outer membrane | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| integral to mitochondrial membrane | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| NAD metabolic process | 1.5158E-5 | 2 | 25 | 2 | 6292 |
| nicotinamide nucleotide metabolic process | 4.5626E-5 | 2 | 43 | 2 | 6292 |
| pyridine nucleotide metabolic process | 5.2295E-5 | 2 | 46 | 2 | 6292 |
| oxidoreduction coenzyme metabolic process | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| coenzyme metabolic process | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| nucleotide metabolic process | 4.1068E-4 | 2 | 128 | 2 | 6292 |
| nucleoside phosphate metabolic process | 4.1068E-4 | 2 | 128 | 2 | 6292 |
| cofactor metabolic process | 5.9526E-4 | 2 | 154 | 2 | 6292 |
| nucleobase, nucleoside and nucleotide metabolic process | 6.1875E-4 | 2 | 157 | 2 | 6292 |
| NAD biosynthetic process | 2.224E-3 | 2 | 7 | 1 | 6292 |
| nicotinamide nucleotide biosynthetic process | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| pyridine nucleotide biosynthetic process | 3.811E-3 | 2 | 12 | 1 | 6292 |
| NADH oxidation | 3.811E-3 | 2 | 12 | 1 | 6292 |
| NADH metabolic process | 4.7627E-3 | 2 | 15 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| kynurenine 3-monooxygenase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| glycerol-3-phosphate dehydrogenase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| oxidoreductase activity | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| monooxygenase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.2981E-3 | 2 | 23 | 1 | 6292 |