| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.765883136349] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| retrotransposon nucleocapsid | 4.3024E-4 | 2 | 131 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA integration | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| viral procapsid maturation | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| viral assembly, maturation, egress, and release | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| viral reproduction | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| viral capsid assembly | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| virion assembly | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| developmental maturation | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| viral reproductive process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| cellular component assembly involved in morphogenesis | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| viral infectious cycle | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| transposition, RNA-mediated | 4.4352E-4 | 2 | 133 | 2 | 6292 |
| transposition | 4.987E-4 | 2 | 141 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ribonuclease H activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| aspartic-type peptidase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| aspartic-type endopeptidase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| RNA binding | 3.3934E-3 | 2 | 367 | 2 | 6292 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| ATP binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| adenyl ribonucleotide binding | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| endoribonuclease activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |
| adenyl nucleotide binding | 9.5139E-3 | 2 | 30 | 1 | 6292 |
| purine nucleoside binding | 9.8303E-3 | 2 | 31 | 1 | 6292 |