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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.779449507849]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

proteasome complex 5.6994E-5 2 48 2 6292
proteasome core complex, alpha-subunit complex 2.224E-3 2 7 1 6292
proteasome regulatory particle, base subcomplex 2.859E-3 2 9 1 6292
proteasome core complex 5.0798E-3 2 16 1 6292
proteasome accessory complex 7.2981E-3 2 23 1 6292
proteasome regulatory particle 7.2981E-3 2 23 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ubiquitin-dependent protein catabolic process 6.1087E-4 2 156 2 6292
modification-dependent protein catabolic process 6.1087E-4 2 156 2 6292
proteolysis involved in cellular protein catabolic process 6.3467E-4 2 159 2 6292
modification-dependent macromolecule catabolic process 6.7534E-4 2 164 2 6292
cellular protein catabolic process 7.3441E-4 2 171 2 6292
proteolysis 8.8816E-4 2 188 2 6292
protein catabolic process 8.9766E-4 2 189 2 6292
cellular macromolecule catabolic process 1.7674E-3 2 265 2 6292
macromolecule catabolic process 2.1762E-3 2 294 2 6292
cellular catabolic process 4.3405E-3 2 415 2 6292
catabolic process 6.2027E-3 2 496 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

endopeptidase activity 7.2304E-5 2 54 2 6292
peptidase activity, acting on L-amino acid peptides 2.256E-4 2 95 2 6292
peptidase activity 9.2646E-4 2 192 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle