| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.052] [SVM Score: 0.801903546324] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| RAT1 |
|
|
|
| RNT1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear outer membrane | 1.8468E-4 | 2 | 86 | 2 | 6292 |
| nuclear membrane | 2.3525E-4 | 2 | 97 | 2 | 6292 |
| outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| organelle outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
| nuclear envelope | 9.9543E-4 | 2 | 199 | 2 | 6292 |
| nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| termination of RNA polymerase II transcription, poly(A)-coupled | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| termination of RNA polymerase II transcription | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| transcription termination | 6.6645E-3 | 2 | 21 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ribonuclease III activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| ribonuclease activity | 5.5711E-4 | 2 | 149 | 2 | 6292 |
| 5'-3' exoribonuclease activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| nuclease activity | 9.9543E-4 | 2 | 199 | 2 | 6292 |
| 5'-3' exonuclease activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| hydrolase activity, acting on ester bonds | 2.929E-3 | 2 | 341 | 2 | 6292 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| exoribonuclease activity | 8.248E-3 | 2 | 26 | 1 | 6292 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 8.248E-3 | 2 | 26 | 1 | 6292 |
| endoribonuclease activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |