| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.862508875789] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein-DNA complex | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| delta DNA polymerase complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| origin recognition complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| nuclear origin of replication recognition complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| DNA polymerase complex | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| pre-replicative complex | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| nuclear replisome | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| replisome | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| nuclear replication fork | 6.3477E-3 | 2 | 20 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA-dependent DNA replication | 1.678E-4 | 2 | 82 | 2 | 6292 |
| DNA replication | 3.791E-4 | 2 | 123 | 2 | 6292 |
| mutagenesis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| base-excision repair | 3.811E-3 | 2 | 12 | 1 | 6292 |
| pre-replicative complex assembly | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| leading strand elongation | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| postreplication repair | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| lagging strand elongation | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| mismatch repair | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
| DNA strand elongation | 9.8303E-3 | 2 | 31 | 1 | 6292 |
| DNA strand elongation involved in DNA replication | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| single-stranded DNA specific exodeoxyribonuclease activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| single-stranded DNA specific 3'-5' exodeoxyribonuclease activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| 3'-5'-exodeoxyribonuclease activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| exodeoxyribonuclease activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| DNA replication origin binding | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| deoxyribonuclease activity | 9.1975E-3 | 2 | 29 | 1 | 6292 |