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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.893169039074]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mitochondrial respiratory chain 1.6421E-5 2 26 2 6292
respiratory chain 1.6421E-5 2 26 2 6292
mitochondrial membrane part 2.5011E-4 2 100 2 6292
mitochondrial inner membrane 7.6048E-4 2 174 2 6292
organelle inner membrane 8.5997E-4 2 185 2 6292
respiratory chain complex II 1.2712E-3 2 4 1 6292
mitochondrial respiratory chain complex II 1.2712E-3 2 4 1 6292
succinate dehydrogenase complex (ubiquinone) 1.2712E-3 2 4 1 6292
fumarate reductase complex 1.2712E-3 2 4 1 6292
succinate dehydrogenase complex 1.2712E-3 2 4 1 6292
mitochondrial membrane 1.7808E-3 2 266 2 6292
mitochondrial envelope 2.4514E-3 2 312 2 6292
mitochondrial respiratory chain complex IV 3.811E-3 2 12 1 6292
respiratory chain complex IV 3.811E-3 2 12 1 6292
mitochondrial part 5.6881E-3 2 475 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

respiratory electron transport chain 1.5158E-5 2 25 2 6292
electron transport chain 1.5158E-5 2 25 2 6292
ATP synthesis coupled electron transport 1.5158E-5 2 25 2 6292
mitochondrial ATP synthesis coupled electron transport 1.5158E-5 2 25 2 6292
oxidation reduction 1.6421E-5 2 26 2 6292
oxidative phosphorylation 5.2295E-5 2 46 2 6292
cellular respiration 2.3525E-4 2 97 2 6292
energy derivation by oxidation of organic compounds 5.5711E-4 2 149 2 6292
phosphorylation 8.0494E-4 2 179 2 6292
generation of precursor metabolites and energy 9.5571E-4 2 195 2 6292
mitochondrial electron transport, succinate to ubiquinone 1.2712E-3 2 4 1 6292
phosphorus metabolic process 1.3191E-3 2 229 2 6292
phosphate metabolic process 1.3191E-3 2 229 2 6292
mitochondrial electron transport, cytochrome c to oxygen 3.1764E-3 2 10 1 6292
acetyl-CoA catabolic process 4.7627E-3 2 15 1 6292
tricarboxylic acid cycle 4.7627E-3 2 15 1 6292
acetyl-CoA metabolic process 6.3477E-3 2 20 1 6292
coenzyme catabolic process 6.3477E-3 2 20 1 6292
cofactor catabolic process 6.9813E-3 2 22 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor 1.5888E-3 2 5 1 6292
succinate dehydrogenase (ubiquinone) activity 1.5888E-3 2 5 1 6292
succinate dehydrogenase activity 1.5888E-3 2 5 1 6292
oxidoreductase activity 1.9877E-3 2 281 2 6292
heme-copper terminal oxidase activity 3.811E-3 2 12 1 6292
cytochrome-c oxidase activity 3.811E-3 2 12 1 6292
oxidoreductase activity, acting on heme group of donors 3.811E-3 2 12 1 6292
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 3.811E-3 2 12 1 6292
oxidoreductase activity, acting on the CH-CH group of donors 7.6148E-3 2 24 1 6292

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