From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.93154861932] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
MEH1 |
|
|
|
SLM4 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
late endosome membrane | 5.0527E-7 | 2 | 5 | 2 | 6292 |
late endosome | 1.1672E-5 | 2 | 22 | 2 | 6292 |
endosomal part | 1.2783E-5 | 2 | 23 | 2 | 6292 |
endosome membrane | 1.2783E-5 | 2 | 23 | 2 | 6292 |
fungal-type vacuole membrane | 1.3647E-4 | 2 | 74 | 2 | 6292 |
endosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
microautophagy | 7.579E-7 | 2 | 6 | 2 | 6292 |
autophagy | 4.3504E-5 | 2 | 42 | 2 | 6292 |
membrane invagination | 2.2085E-4 | 2 | 94 | 2 | 6292 |
membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
cellular catabolic process | 4.3405E-3 | 2 | 415 | 2 | 6292 |
catabolic process | 6.2027E-3 | 2 | 496 | 2 | 6292 |
vacuolar acidification | 7.6148E-3 | 2 | 24 | 1 | 6292 |
pH reduction | 7.6148E-3 | 2 | 24 | 1 | 6292 |
intracellular pH reduction | 7.6148E-3 | 2 | 24 | 1 | 6292 |
regulation of cellular pH | 7.9314E-3 | 2 | 25 | 1 | 6292 |
regulation of intracellular pH | 7.9314E-3 | 2 | 25 | 1 | 6292 |
regulation of pH | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
phosphatidylinositol-3,4-bisphosphate binding | 3.1786E-4 | 2 | 1 | 1 | 6292 |