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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.937191041267]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription elongation factor complex 1.2783E-5 2 23 2 6292
nucleotide-excision repair factor 4 complex 1.2712E-3 2 4 1 6292
Cul3-RING ubiquitin ligase complex 1.2712E-3 2 4 1 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
Cdc73/Paf1 complex 2.5415E-3 2 8 1 6292
cullin-RING ubiquitin ligase complex 4.4455E-3 2 14 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292
nucleotide-excision repair complex 6.6645E-3 2 21 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA elongation from RNA polymerase II promoter 3.744E-5 2 39 2 6292
RNA elongation 5.0022E-5 2 45 2 6292
nucleotide-excision repair, DNA damage recognition 2.224E-3 2 7 1 6292
transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
post-translational protein modification 3.2108E-3 2 357 2 6292
protein ubiquitination during ubiquitin-dependent protein catabolic process 3.4937E-3 2 11 1 6292
protein modification process 6.278E-3 2 499 2 6292
histone methylation 6.3477E-3 2 20 1 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
protein amino acid alkylation 7.6148E-3 2 24 1 6292
protein amino acid methylation 7.6148E-3 2 24 1 6292
transcription 7.6839E-3 2 552 2 6292
chromosome organization 7.7677E-3 2 555 2 6292
macromolecule modification 8.1649E-3 2 569 2 6292
DNA metabolic process 8.631E-3 2 585 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription elongation regulator activity 8.6401E-6 2 19 2 6292
transcription regulator activity 2.8947E-3 2 339 2 6292
RNA polymerase II transcription elongation factor activity 4.1283E-3 2 13 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle